SMTL ID : 7dli.1

Crystal structure of mouse CRY1 in complex with KL001 compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x H8X: N-[(2R)-3-carbazol-9-yl-2-oxidanyl-propyl]-N-(furan-2-ylmethyl)methanesulfonamide(Non-covalent)

H8X.1: 13 residues within 4Å: Chain A: W.294, H.357, R.360, H.361, F.383, L.387, D.389, A.390, I.394, N.395, S.398, W.399 Chain C: D.205 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:R.360, A:F.383, A:L.387, A:I.394, C:D.205 Hydrogen bonds: A:S.398 pi-Stacking: A:W.294, A:W.399 pi-Cation interactions: A:W.294, A:W.294, A:R.360 H8X.2: 12 residues within 4Å: Chain B: W.294, F.298, H.357, R.360, H.361, F.383, D.389, I.394, S.398, W.399, W.401, L.402 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.294, B:F.298, B:R.360, B:F.383, B:I.394, B:L.402, B:L.402 pi-Stacking: B:W.399 pi-Cation interactions: B:R.360 H8X.4: 18 residues within 4Å: Chain C: S.254, Q.291, W.294, R.295, F.298, H.357, R.360, H.361, A.364, F.383, L.387, D.389, I.394, N.395, S.398, W.399, W.401, L.402 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:W.294, C:W.294, C:R.360, C:A.364, C:F.383, C:F.383, C:L.387, C:I.394, C:N.395, C:W.401, C:L.402 Hydrogen bonds: C:H.357, C:R.360 pi-Cation interactions: C:R.360

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain C: F.339, W.450, P.471, V.473, N.474, H.475 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.473, C:H.475 Water bridges: C:A.476

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, S. et al., Structural differences in the FAD-binding pockets and lid loops of mammalian CRY1 and CRY2 for isoform-selective regulation. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-06-23

Peptides

Cryptochrome-1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Cryptochrome-1

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