SMTL ID : 7dlv.2 (1 other biounit)

shrimp dUTPase in complex with Stl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-3-3-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.121 Chain B: K.121 Chain C: K.121 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Salt bridges: C:K.121, A:K.121, B:K.121 SO4.2: 6 residues within 4Å: Chain B: K.15, A.20, F.21, T.22 Chain E: V.57, H.75 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain B Salt bridges: E:H.75, B:K.15 Hydrogen bonds: B:T.22 SO4.3: 2 residues within 4Å: Chain B: K.52, N.93 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.93 Salt bridges: B:K.52 SO4.5: 3 residues within 4Å: Chain D: P.13, T.14, H.15 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.14, D:T.14, D:T.14, D:H.15 Salt bridges: D:H.15 SO4.6: 4 residues within 4Å: Chain E: P.13, T.14, H.15, Y.16 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:T.14, E:T.14, E:H.15, E:Y.16

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: D.80 Chain B: D.80 Chain C: D.80 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A Metal complexes: C:D.80, B:D.80, A:D.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structural basis of staphylococcal Stl inhibition on a eukaryotic dUTPase. Int.J.Biol.Macromol. (2021)

Release Date

2021-12-01

Peptides

shrimp dUTPase: ABC
Orf20: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

shrimp dUTPase

Orf20

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