SMTL ID : 7dr0.1

Structure of Wild-type PSI monomer1 from Cyanophora paradoxa

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)

CL0.1: 26 residues within 4Å: Chain A: F.453, I.538, F.541, T.542, Y.600, N.601, S.604, V.605, F.608, I.643, W.646, L.651, A.655, F.673, H.677, W.680, Y.732, T.739, T.740, F.743 Chain B: F.623, L.627, W.628 Ligands: CLA.2, CLA.55, CLA.56 25 PLIP interactions: 5 interactions with chain B, 20 interactions with chain A, Hydrophobic interactions: B:F.623, B:F.623, B:F.623, B:L.627, B:L.627, A:F.453, A:F.541, A:V.605, A:V.605, A:F.608, A:I.643, A:I.643, A:W.646, A:L.651, A:L.651, A:F.673, A:W.680, A:W.680, A:T.739, A:F.743 Hydrogen bonds: A:Y.600 pi-Stacking: A:F.673, A:W.680, A:W.680 Metal complexes: A:H.677

83 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)

CLA.2: 27 residues within 4Å: Chain A: F.453, I.457, D.460, F.541, F.597, W.598, Y.600, N.601, I.643, L.647, W.680, Y.732 Chain B: W.651, L.654, F.655, H.657, L.658, W.660, A.661, F.664 Ligands: CL0.1, CLA.55, CLA.57, CLA.63, CLA.64, BCR.90, BCR.97 24 PLIP interactions: 15 interactions with chain A, 9 interactions with chain B, Hydrophobic interactions: A:F.453, A:F.453, A:I.457, A:I.457, A:D.460, A:F.541, A:F.597, A:W.598, A:W.598, A:W.598, A:Y.600, A:N.601, A:I.643, A:W.680, A:Y.732, B:W.651, B:W.651, B:F.655, B:F.655, B:L.658, B:W.660, B:A.661, B:F.664 Salt bridges: B:H.657 CLA.3: 23 residues within 4Å: Chain A: F.678, A.681, F.682, L.684, M.685, F.688, S.689, Y.693, W.694, L.697 Chain B: S.423, S.426, L.427, G.430, F.431, L.528, L.535, I.536, L.581, F.584, W.585 Ligands: CLA.56, BCR.94 16 PLIP interactions: 8 interactions with chain A, 8 interactions with chain B, Hydrophobic interactions: A:F.678, A:A.681, A:L.684, A:M.685, A:F.688, A:Y.693, A:W.694, B:L.427, B:I.536, B:I.536, B:L.581, B:L.581, B:F.584 pi-Stacking: A:F.682, B:W.585 Hydrogen bonds: B:L.427 CLA.4: 16 residues within 4Å: Chain A: P.32, I.49, L.52, H.53 Chain F: I.144 Chain H: Y.6, A.10, P.11 Ligands: CLA.5, CLA.9, CLA.12, CLA.42, CLA.43, PQN.45, LHG.52, BCR.100 7 PLIP interactions: 4 interactions with chain A, 1 interactions with chain F, 2 interactions with chain H, Hydrophobic interactions: A:P.32, A:I.49, A:L.52, F:I.144, H:Y.6, H:P.11 Metal complexes: A:H.53 CLA.5: 17 residues within 4Å: Chain A: H.34, F.35, H.53, V.56, H.57, F.59, Y.62, A.76, G.79, H.80, V.83 Ligands: CLA.4, CLA.6, CLA.7, CLA.12, CLA.31, LHG.52 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:V.56, A:A.76, A:V.83 Salt bridges: A:H.34 Metal complexes: A:H.57 CLA.6: 25 residues within 4Å: Chain A: H.57, F.59, I.73, A.76, H.77, H.80, L.81, V.84, F.85, L.88, W.349, H.350, Q.352, L.353, N.356, F.360 Ligands: CLA.5, CLA.7, CLA.14, CLA.15, CLA.26, CLA.30, CLA.31, BCR.47, BCR.48 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:H.57, A:F.59, A:F.59, A:I.73, A:I.73, A:A.76, A:H.77, A:L.81, A:V.84, A:F.85, A:L.88, A:W.349, A:W.349, A:Q.352, A:L.353, A:L.353, A:F.360 Hydrogen bonds: A:N.356 Salt bridges: A:H.80 Metal complexes: A:H.77 CLA.7: 17 residues within 4Å: Chain A: H.57, H.80, V.84, W.87, F.360, I.397, F.400, L.401 Ligands: CLA.5, CLA.6, CLA.12, CLA.29, CLA.30, CLA.31, BCR.48, LHG.52, BCR.99 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:V.84, A:W.87, A:W.87, A:F.360, A:I.397, A:F.400 Hydrogen bonds: A:H.57 Metal complexes: A:H.80 CLA.8: 14 residues within 4Å: Chain A: I.86, W.87, S.89, G.90, F.93, H.94, F.98, Q.116, V.117, W.119 Chain H: F.19 Ligands: CLA.9, CLA.10, BCR.99 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain H, Hydrophobic interactions: A:F.93, A:F.93, A:F.93, A:F.98, A:Q.116, H:F.19 pi-Stacking: A:F.98 Metal complexes: A:H.94 CLA.9: 21 residues within 4Å: Chain A: W.87, Q.116, Q.139, I.140, T.141, S.142, L.144, A.668, Y.669, W.741 Ligands: CLA.4, CLA.8, CLA.10, CLA.12, CLA.29, CLA.31, CLA.43, BCR.51, LHG.52, CLA.56, BCR.99 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:A.668, A:Y.669, A:W.741 Hydrogen bonds: A:T.141 CLA.10: 19 residues within 4Å: Chain A: Q.116, V.117, V.118, W.119, Q.124, L.127, I.138, A.668, L.671 Chain B: V.442, F.446 Chain H: I.26 Ligands: CLA.8, CLA.9, CLA.29, CLA.56, CLA.79, BCR.99, BCR.100 10 PLIP interactions: 2 interactions with chain B, 7 interactions with chain A, 1 interactions with chain H, Hydrophobic interactions: B:V.442, B:F.446, A:V.118, A:W.119, A:I.138, A:A.668, A:L.671, H:I.26 Hydrogen bonds: A:Q.116, A:W.119 CLA.11: 14 residues within 4Å: Chain A: I.15, I.17, F.74, F.78, L.172, F.175, A.176, F.179, H.180, A.184, P.186, W.190 Ligands: CLA.13, CLA.14 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:I.15, A:F.74, A:F.78, A:L.172, A:F.175, A:A.176, A:F.179, A:P.186, A:W.190, A:W.190 pi-Stacking: A:F.74 Metal complexes: A:H.180 CLA.12: 25 residues within 4Å: Chain A: V.22, S.23, T.24, S.25, F.26, K.28, W.29, H.34, K.72, S.75, G.79, V.83, L.174, G.177, W.178, Y.181, H.182 Chain H: Y.6 Ligands: CLA.4, CLA.5, CLA.7, CLA.9, LHG.52, BCR.99, BCR.100 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:T.24, A:F.26, A:K.28, A:V.83, A:L.174, A:W.178, A:Y.181, A:Y.181 Salt bridges: A:K.28, A:H.34, A:K.72 Metal complexes: A:H.182 CLA.13: 11 residues within 4Å: Chain A: K.14, I.15, W.190, N.193, S.196, H.200, W.316 Ligands: CLA.11, CLA.14, CLA.21, BCR.48 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.15, A:W.316 Hydrogen bonds: A:S.196 Salt bridges: A:H.200 Metal complexes: A:H.200 CLA.14: 18 residues within 4Å: Chain A: F.74, H.77, F.78, L.81, W.190, F.191, N.193, S.196, M.197, H.200, H.201, L.205 Ligands: CLA.6, CLA.11, CLA.13, CLA.26, CLA.30, BCR.48 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:F.74, A:W.190, A:W.190, A:F.191, A:M.197 Salt bridges: A:H.77 Metal complexes: A:H.201 CLA.15: 16 residues within 4Å: Chain A: G.152, I.153, Q.158, V.161, T.162, S.212, W.213, H.216, V.220, P.240, I.244 Ligands: CLA.6, CLA.16, CLA.17, BCR.47, BCR.48 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:T.162, A:H.216, A:I.244 Salt bridges: A:H.216 pi-Stacking: A:W.213 Metal complexes: A:H.216 CLA.16: 15 residues within 4Å: Chain A: L.211, G.215, I.218, H.219, F.243, I.244, K.247, F.257, G.260, L.261, Y.272, L.299 Ligands: CLA.15, CLA.18, BCR.103 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:L.211, A:I.218, A:I.244, A:F.257, A:F.257, A:L.261, A:Y.272, A:Y.272, A:L.299 Salt bridges: A:H.219, A:K.247 Metal complexes: A:H.219 CLA.17: 7 residues within 4Å: Chain A: L.157, V.161, L.239, H.241, L.245 Ligands: CLA.15, BCR.47 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:V.161, A:H.241, A:L.245 Salt bridges: A:H.241 pi-Stacking: A:H.241 CLA.18: 20 residues within 4Å: Chain A: W.269, Y.272, L.276, T.277, F.278, H.296, L.299, A.300, V.303, L.304, V.307, N.501 Chain I: I.146, L.153 Ligands: CLA.16, CLA.19, CLA.23, CLA.37, BCR.103, CLA.104 19 PLIP interactions: 17 interactions with chain A, 2 interactions with chain I, Hydrophobic interactions: A:W.269, A:W.269, A:Y.272, A:Y.272, A:L.276, A:L.276, A:L.299, A:L.299, A:A.300, A:V.303, A:V.303, A:L.304, A:V.307, I:I.146, I:L.153 Hydrogen bonds: A:N.501 Salt bridges: A:H.296 pi-Stacking: A:W.269 Metal complexes: A:H.296 CLA.19: 20 residues within 4Å: Chain A: T.277, F.278, G.280, L.289, D.293, S.294, H.296, H.297, A.300, I.301, L.304, H.370, M.374, P.376, N.505, A.506 Ligands: CLA.18, CLA.20, CLA.28, CLA.36 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:F.278, A:F.278, A:L.289, A:D.293, A:H.296, A:H.297, A:A.300, A:I.301 Metal complexes: A:H.297 CLA.20: 24 residues within 4Å: Chain A: A.150, F.206, G.209, S.210, W.213, Q.217, L.291, S.294, H.297, H.298, I.301, F.305, L.363, V.367, H.370, M.371, P.376, Y.377 Ligands: CLA.19, CLA.22, CLA.28, CLA.30, CLA.36, BCR.48 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:F.206, A:W.213, A:I.301, A:I.301, A:F.305, A:F.305, A:F.305, A:L.363, A:V.367, A:P.376, A:P.376 pi-Stacking: A:W.213, A:H.297 Metal complexes: A:H.298 CLA.21: 17 residues within 4Å: Chain A: N.199, H.200, G.203, G.204, L.208, H.310, Y.312, T.314, W.316, I.318 Chain I: L.138, A.139 Ligands: CLA.13, BCR.47, BCR.48, CLA.102, BCR.103 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain I, Hydrophobic interactions: A:N.199, A:L.208, A:L.208, A:W.316, A:I.318, I:L.138 Hydrogen bonds: A:N.199 Metal complexes: A:H.310 CLA.22: 23 residues within 4Å: Chain A: M.198, L.202, L.304, F.305, A.308, M.311, Y.312, M.322, M.325, Y.326, L.359, V.430, L.551, V.554, L.555 Ligands: CLA.20, CLA.23, CLA.24, CLA.25, CLA.26, CLA.28, BCR.49, BCR.50 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:L.202, A:F.305, A:A.308, A:L.359, A:V.430, A:L.551, A:V.554, A:L.555 Hydrogen bonds: A:Y.312 CLA.23: 17 residues within 4Å: Chain A: V.307, H.310, M.311, R.313, I.318, G.319, H.320 Chain I: V.110, G.111, G.114, I.115, K.116 Ligands: CLA.18, CLA.22, CLA.24, BCR.103, CLA.104 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain I, Hydrophobic interactions: A:V.307, A:M.311, I:V.110 Hydrogen bonds: A:G.319, I:K.116 Salt bridges: A:H.320 Metal complexes: A:H.320 CLA.24: 10 residues within 4Å: Chain A: M.311, H.320, E.324, M.325, S.328, H.329 Ligands: CLA.22, CLA.23, CLA.25, CLA.44 2 PLIP interactions: 2 interactions with chain A, Salt bridges: A:H.329 Metal complexes: A:H.329 CLA.25: 16 residues within 4Å: Chain A: Y.326, H.329, T.334, H.338, V.341, L.426, V.427, V.430 Ligands: CLA.22, CLA.24, CLA.26, CLA.32, CLA.44, BCR.49, BCR.50, LHG.53 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:Y.326, A:T.334, A:V.341, A:V.341, A:L.426, A:V.427, A:V.430 Salt bridges: A:H.329, A:H.338 Metal complexes: A:H.338 CLA.26: 29 residues within 4Å: Chain A: L.188, F.191, Q.192, A.194, M.197, M.198, H.201, L.205, F.206, M.322, Y.326, Y.342, F.345, T.346, N.347, S.348, W.349, Q.352, L.355, N.356, L.359, F.360 Ligands: CLA.6, CLA.14, CLA.22, CLA.25, CLA.28, CLA.30, BCR.49 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.188, A:Q.192, A:A.194, A:M.197, A:L.205, A:Y.326, A:Y.342, A:F.345, A:F.345, A:F.345, A:T.346, A:W.349, A:W.349, A:Q.352, A:L.355, A:N.356, A:L.359 CLA.27: 15 residues within 4Å: Chain A: I.365, I.366, H.369, G.399, I.402, I.543, T.546, V.547, M.599, L.603 Ligands: CLA.28, CLA.38, CLA.39, CLA.40, BCR.50 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:I.365, A:I.402, A:I.543, A:V.547, A:L.603 Salt bridges: A:H.369 CLA.28: 20 residues within 4Å: Chain A: L.359, L.363, I.366, H.369, H.370, Y.372, S.373, M.374, A.506, S.507, F.510 Ligands: CLA.19, CLA.20, CLA.22, CLA.26, CLA.27, CLA.36, CLA.38, CLA.40, BCR.50 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:L.359, A:L.363, A:I.366, A:A.506, A:F.510, A:F.510 Metal complexes: A:H.370 CLA.29: 22 residues within 4Å: Chain A: W.87, T.141, S.142, C.389, T.392, H.393, W.396, I.397, F.400, M.672, I.737, W.741, F.744, H.745 Ligands: CLA.7, CLA.9, CLA.10, CLA.30, BCR.51, LHG.52, CLA.56, BCR.99 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:H.393, A:I.397, A:F.400, A:W.741, A:F.744 Hydrogen bonds: A:S.142 Salt bridges: A:H.745 Metal complexes: A:H.393 CLA.30: 25 residues within 4Å: Chain A: W.87, L.88, S.142, G.143, L.144, M.147, F.206, L.359, F.360, L.363, S.364, V.367, M.371, Y.377, L.390, H.393, H.394, I.397 Ligands: CLA.6, CLA.7, CLA.14, CLA.20, CLA.26, CLA.29, BCR.48 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:W.87, A:W.87, A:L.144, A:F.206, A:F.360, A:F.360, A:F.360, A:L.363, A:V.367, A:I.397 Hydrogen bonds: A:Y.377 pi-Stacking: A:H.393 Metal complexes: A:H.394 CLA.31: 26 residues within 4Å: Chain A: H.53, A.54, V.56, H.57, D.58, L.353, L.357, F.400, L.401, G.404, A.407, H.408, I.411, R.415, F.571, R.572, W.589, V.592 Ligands: CLA.5, CLA.6, CLA.7, CLA.9, CLA.43, BCR.51, LHG.52, CLA.56 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:D.58, A:L.353, A:L.357, A:L.357, A:L.401, A:A.407, A:V.592 Hydrogen bonds: A:V.56, A:H.57, A:D.58, A:R.572 Salt bridges: A:H.57, A:R.572 Metal complexes: A:H.408 CLA.32: 16 residues within 4Å: Chain A: F.333, T.334, L.426, R.429, V.430, R.432, H.433, I.437, H.440 Chain J: L.18, T.20, I.22 Ligands: CLA.25, CLA.33, CLA.40, LHG.53 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain J, Hydrophobic interactions: A:L.426, A:V.430, A:H.440, J:T.20 Hydrogen bonds: A:R.429 Salt bridges: A:R.429, A:H.433 Metal complexes: A:H.433 CLA.33: 19 residues within 4Å: Chain A: A.436, H.440, W.443 Chain B: W.683, A.684, R.687, T.688, P.689 Chain J: L.18, V.28, L.31, L.32 Ligands: CLA.32, CLA.39, CLA.40, CLA.54, BCR.105, CLA.107, BCR.110 8 PLIP interactions: 4 interactions with chain A, 3 interactions with chain J, 1 interactions with chain B, Hydrophobic interactions: A:W.443, A:W.443, A:W.443, J:V.28, J:L.31, J:L.32, B:T.688 Metal complexes: A:H.440 CLA.34: 19 residues within 4Å: Chain A: W.443, I.446, F.447, F.450, H.451 Chain B: I.21 Chain J: L.66 Ligands: CLA.35, CLA.39, CLA.54, CLA.85, CLA.86, PQN.87, BCR.90, BCR.97, BCR.105, CLA.107, CLA.108, BCR.109 7 PLIP interactions: 5 interactions with chain A, 1 interactions with chain J, 1 interactions with chain B, Hydrophobic interactions: A:W.443, A:F.447, A:F.450, A:F.450, J:L.66, B:I.21 Metal complexes: A:H.451 CLA.35: 27 residues within 4Å: Chain A: F.450, G.454, L.455, I.457, H.458, T.461, M.462, R.467, D.470, F.472, I.477 Chain B: H.95 Chain J: P.62, F.63, L.66, G.67, P.68, R.70 Ligands: CLA.34, CLA.57, CLA.63, CLA.64, BCR.97, BCR.105, CLA.107, CLA.108, BCR.110 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain J, Hydrophobic interactions: A:F.450, A:L.455, A:H.458, J:P.62, J:P.62, J:F.63, J:L.66 Hydrogen bonds: A:R.467, A:R.467 Salt bridges: A:H.458, A:R.467 Metal complexes: A:H.458 CLA.36: 16 residues within 4Å: Chain A: W.486, V.487, V.490, N.491, A.494, T.498, A.499, A.506, F.510 Ligands: CLA.19, CLA.20, CLA.28, CLA.37, CLA.38, CLA.40, BCR.50 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:W.486, A:V.487, A:V.490, A:T.498, A:F.510 CLA.37: 10 residues within 4Å: Chain A: F.278, T.498, A.499, P.500, N.501, A.502 Ligands: CLA.18, CLA.36, BCR.50, CLA.104 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:P.500 Hydrogen bonds: A:N.501 Metal complexes: A:T.498 CLA.38: 19 residues within 4Å: Chain A: H.369, Y.372, F.483, A.484, V.487, Q.488, F.510, I.526, H.536, H.539, I.543, V.606, H.609, F.610 Ligands: CLA.27, CLA.28, CLA.36, CLA.39, CLA.40 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:Y.372, A:A.484, A:I.526, A:H.539, A:I.543, A:V.606, A:V.606, A:F.610 Hydrogen bonds: A:Q.488 pi-Cation interactions: A:H.609 Metal complexes: A:H.536 CLA.39: 20 residues within 4Å: Chain A: V.444, F.447, L.448, Q.480, P.481, V.482, F.483, A.484, D.532, F.533, H.536, H.537, A.540, H.544 Ligands: CLA.27, CLA.33, CLA.34, CLA.38, CLA.40, CLA.107 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:V.444, A:F.447, A:F.447, A:L.448, A:L.448, A:L.448, A:V.482, A:F.483, A:F.483 Hydrogen bonds: A:F.483, A:A.484 Salt bridges: A:H.536 pi-Stacking: A:F.533 Metal complexes: A:H.537 CLA.40: 17 residues within 4Å: Chain A: I.437, L.441, W.443, V.444, A.540, I.543, H.544, V.547 Ligands: CLA.27, CLA.28, CLA.32, CLA.33, CLA.36, CLA.38, CLA.39, BCR.49, BCR.50 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:L.441, A:L.441, A:W.443, A:V.444, A:I.543, A:V.547, A:V.547 Salt bridges: A:H.544 Metal complexes: A:H.544 CLA.41: 18 residues within 4Å: Chain A: I.701, A.704, H.705, L.708, F.710 Chain B: S.420, S.423, W.424, L.427 Chain F: G.123, G.126, Y.129 Ligands: CLA.42, CLA.43, PQN.45, CLA.77, CLA.78, BCR.94 9 PLIP interactions: 2 interactions with chain F, 6 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: F:Y.129, F:Y.129, A:I.701, A:I.701, A:L.708, A:F.710, B:L.427 Salt bridges: A:H.705 Metal complexes: A:H.705 CLA.42: 21 residues within 4Å: Chain A: T.46, I.49, W.50, I.701, V.702, H.705, F.710, P.712, P.716, R.717 Chain F: G.126, Y.129, L.130, E.143, I.146 Chain H: I.13, T.17 Ligands: CLA.4, CLA.41, PQN.45, BCR.94 10 PLIP interactions: 8 interactions with chain A, 1 interactions with chain H, 1 interactions with chain F, Hydrophobic interactions: A:T.46, A:I.49, A:W.50, A:I.701, A:V.702, A:F.710, A:P.712, A:P.716, H:T.17, F:I.146 CLA.43: 23 residues within 4Å: Chain A: W.50, I.679, F.682, L.719, Q.723, A.726, V.727, A.730, H.731, L.734 Chain H: A.18, A.22, L.25 Ligands: CLA.4, CLA.9, CLA.31, CLA.41, PQN.45, BCR.51, LHG.52, CLA.79, BCR.94, BCR.99 11 PLIP interactions: 2 interactions with chain H, 9 interactions with chain A, Hydrophobic interactions: H:A.22, H:L.25, A:W.50, A:I.679, A:F.682, A:L.719, A:V.727 Hydrogen bonds: A:Q.723 Salt bridges: A:H.731 pi-Stacking: A:F.682 Metal complexes: A:H.731 CLA.44: 8 residues within 4Å: Chain A: H.329, K.330, P.332, F.333 Ligands: CLA.24, CLA.25, BCR.49, LHG.53 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:P.332, A:F.333 pi-Stacking: A:F.333 CLA.54: 21 residues within 4Å: Chain A: S.439, N.442, W.443, I.446 Chain B: L.681, A.684, H.685, T.688, A.691, V.694 Chain J: I.89, C.93, L.96 Ligands: CLA.33, CLA.34, CLA.85, CLA.86, BCR.90, BCR.105, CLA.107, BCR.109 8 PLIP interactions: 2 interactions with chain J, 5 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: J:I.89, J:L.96, B:L.681, B:T.688, B:V.694, B:V.694, A:I.446 pi-Stacking: B:H.685 CLA.55: 26 residues within 4Å: Chain A: L.647, L.651, W.652 Chain B: T.433, L.434, Y.437, V.522, A.525, L.528, W.592, F.595, L.619, W.622, F.623, L.627, S.631, F.653, H.657, W.660, Y.720, T.723, Y.724, F.727 Ligands: CL0.1, CLA.2, CLA.56 24 PLIP interactions: 20 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:T.433, B:L.434, B:Y.437, B:V.522, B:A.525, B:L.528, B:W.592, B:F.595, B:L.619, B:W.622, B:F.623, B:L.627, B:L.627, B:F.653, B:W.660, B:W.660, B:F.727, A:L.647, A:L.651, A:L.651, A:W.652 pi-Stacking: B:F.653, B:W.660 Metal complexes: B:H.657 CLA.56: 29 residues within 4Å: Chain A: L.671, L.674, G.675, H.677, F.678, W.680, A.681 Chain B: L.434, V.438, D.441, L.528, F.584, W.585, N.588, W.592, L.619, F.623, L.627, W.660, F.716 Ligands: CL0.1, CLA.3, CLA.9, CLA.10, CLA.29, CLA.31, BCR.51, CLA.55, BCR.99 19 PLIP interactions: 12 interactions with chain B, 7 interactions with chain A, Hydrophobic interactions: B:L.434, B:V.438, B:V.438, B:L.528, B:W.585, B:W.585, B:N.588, B:W.592, B:L.619, B:W.660, B:F.716, A:L.674, A:L.674, A:H.677, A:W.680, A:A.681 pi-Stacking: B:W.592 Hydrogen bonds: A:F.678 Salt bridges: A:H.677 CLA.57: 26 residues within 4Å: Chain A: N.442, C.445, I.446, G.449, F.450, F.453, G.454, F.541, V.545, L.548, I.549, L.594, F.597, W.598 Chain B: A.661, T.662, F.664, M.665, I.668, Y.673, W.674 Ligands: CLA.2, CLA.35, CLA.86, BCR.90, BCR.97 16 PLIP interactions: 6 interactions with chain B, 10 interactions with chain A, Hydrophobic interactions: B:A.661, B:F.664, B:I.668, B:Y.673, B:W.674, A:I.446, A:F.450, A:F.450, A:V.545, A:I.549, A:L.594, A:L.594, A:F.597 pi-Stacking: B:W.674, A:W.598 Hydrogen bonds: A:G.449 CLA.58: 16 residues within 4Å: Chain B: G.24, I.25, A.28, N.29, F.31, N.34, S.49, I.56 Chain K: A.25, L.28, Y.29 Ligands: CLA.59, CLA.60, LMG.91, BCR.109, BCR.111 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain K, Hydrophobic interactions: B:I.25, B:A.28, B:F.31, B:I.56, K:L.28, K:Y.29 Salt bridges: B:K.45 CLA.59: 21 residues within 4Å: Chain B: N.29, F.31, Y.43, I.46, S.49, H.50, H.53, L.54, I.57, R.174, L.182, L.330, H.331, Q.333, L.334, A.337, L.341 Ligands: CLA.58, CLA.60, CLA.66, CLA.76 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:N.29, B:F.31, B:Y.43, B:I.46, B:I.46, B:L.182, B:L.330, B:L.330, B:Q.333, B:L.334, B:L.334, B:L.341 Salt bridges: B:H.53 pi-Stacking: B:H.53 Metal complexes: B:H.50 CLA.60: 15 residues within 4Å: Chain B: N.29, H.53, I.56, I.57, W.60, I.378, F.381, L.382 Ligands: CLA.58, CLA.59, CLA.62, CLA.74, CLA.75, CLA.76, LMG.91 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:I.57, B:I.57, B:W.60, B:W.60, B:I.378, B:F.381, B:L.382 Hydrogen bonds: B:N.29 Metal complexes: B:H.53 CLA.61: 25 residues within 4Å: Chain B: L.59, W.60, S.62, G.63, F.66, H.67, W.70, Q.71, A.90, S.92, L.143 Chain G: L.5, P.6, L.9, V.10, V.13 Chain K: I.7, A.10, L.11, A.14 Ligands: CLA.62, CLA.63, CLA.74, BCR.97, BCR.111 13 PLIP interactions: 4 interactions with chain G, 7 interactions with chain B, 2 interactions with chain K, Hydrophobic interactions: G:L.5, G:L.9, G:V.10, G:V.13, B:L.59, B:F.66, B:W.70, B:L.143, K:I.7, K:A.14 Hydrogen bonds: B:Q.71 Salt bridges: B:H.67 Metal complexes: B:H.67 CLA.62: 20 residues within 4Å: Chain B: W.60, N.64, V.68, A.88, H.89, N.114, I.115, S.116, Y.117, S.118, V.648, W.649, M.652 Ligands: CLA.60, CLA.61, CLA.63, CLA.74, CLA.76, BCR.90, BCR.97 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:W.60, B:A.88, B:N.114, B:Y.117, B:V.648, B:W.649 Hydrogen bonds: B:Y.117, B:S.118 Metal complexes: B:H.89 CLA.63: 26 residues within 4Å: Chain A: T.461, A.464, L.465 Chain B: H.89, I.91, S.92, D.93, H.95, F.96, N.114, S.647, V.648, W.651 Chain G: V.10, V.21, M.22 Ligands: CLA.2, CLA.35, CLA.61, CLA.62, CLA.64, CLA.74, CLA.86, BCR.90, BCR.97, BCR.109 13 PLIP interactions: 9 interactions with chain B, 1 interactions with chain G, 3 interactions with chain A, Hydrophobic interactions: B:I.91, B:I.91, B:F.96, B:F.96, B:V.648, B:W.651, G:V.21, A:A.464, A:L.465, A:L.465 Hydrogen bonds: B:S.92 pi-Stacking: B:H.95 Metal complexes: B:D.93 CLA.64: 18 residues within 4Å: Chain B: P.94, H.95 Chain G: V.10, P.11, G.14, I.15 Chain J: P.68, L.69, Y.78, L.81, S.82, G.85, V.88 Ligands: CLA.2, CLA.35, CLA.63, BCR.97, BCR.105 7 PLIP interactions: 3 interactions with chain G, 3 interactions with chain J, 1 interactions with chain B, Hydrophobic interactions: G:P.11, G:I.15, G:I.15, J:P.68, J:Y.78, J:V.88 Metal complexes: B:H.95 CLA.65: 12 residues within 4Å: Chain B: F.47, F.51, L.148, F.151, A.152, L.155, H.156, K.160, F.161, P.163, W.167 Ligands: CLA.66 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:F.47, B:F.51, B:L.148, B:F.151, B:A.152, B:F.161, B:P.163, B:W.167, B:W.167 Salt bridges: B:H.156 pi-Stacking: B:F.47 Metal complexes: B:H.156 CLA.66: 17 residues within 4Å: Chain B: F.47, H.50, F.51, L.54, W.123, W.167, N.170, R.174, H.177, H.178, L.182, F.183, I.344 Ligands: CLA.59, CLA.65, CLA.71, CLA.75 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:F.47, B:W.123, B:W.167, B:W.167, B:R.174, B:L.182, B:F.183, B:F.183, B:I.344 Salt bridges: B:H.50 Metal complexes: B:H.178 CLA.67: 20 residues within 4Å: Chain B: Q.127, G.128, M.129, E.134, N.137, G.138, F.141, S.186, A.189, W.190, G.192, H.193, H.196, V.197, G.208, W.209, F.212 Ligands: CLA.68, CLA.75, BCR.88 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:F.141, B:A.189, B:W.190, B:H.193, B:V.197, B:W.209, B:W.209, B:F.212 Salt bridges: B:H.193 pi-Stacking: B:W.190, B:W.209, B:W.209 Metal complexes: B:H.193 CLA.68: 17 residues within 4Å: Chain B: L.188, A.189, T.191, G.192, V.195, H.196, F.212, L.213, V.215, A.216, P.217, H.218, G.221, L.222, L.278 Ligands: CLA.67, BCR.88 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:L.188, B:L.188, B:T.191, B:P.217, B:H.218, B:L.222, B:L.278 Salt bridges: B:H.196 Metal complexes: B:H.196 CLA.69: 12 residues within 4Å: Chain B: F.225, W.230, G.231, T.234, L.255, F.257, H.275, L.278, A.279, V.282, I.495 Ligands: CLA.70 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:F.225, B:W.230, B:W.230, B:W.230, B:W.230, B:L.255, B:L.278, B:L.278, B:A.279, B:V.282, B:V.282 Salt bridges: B:H.275 Metal complexes: B:H.275 CLA.70: 19 residues within 4Å: Chain B: F.257, G.259, G.260, L.268, D.272, H.275, H.276, A.279, I.280, L.283, H.351, I.355, W.496, W.500 Ligands: CLA.69, CLA.71, CLA.73, CLA.80, CLA.81 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:F.257, B:F.257, B:L.268, B:L.268, B:D.272, B:H.275, B:A.279, B:I.280, B:L.283, B:I.355, B:W.500 Hydrogen bonds: B:G.260 Metal complexes: B:H.276 CLA.71: 17 residues within 4Å: Chain B: W.123, T.126, Q.127, F.183, S.186, W.190, I.273, H.276, H.277, I.280, L.347, V.348, P.357, Y.358 Ligands: CLA.66, CLA.70, CLA.75 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:F.183, B:W.190, B:I.273, B:I.280, B:I.280, B:L.347, B:V.348, B:P.357, B:P.357 pi-Stacking: B:W.190, B:W.190, B:H.276 Metal complexes: B:H.277 CLA.72: 17 residues within 4Å: Chain B: V.343, S.346, L.347, Q.350, Q.376, M.383, F.387, L.530, T.533, T.534, L.537, T.589, I.590 Ligands: CLA.73, CLA.82, CLA.84, BCR.89 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:M.383, B:F.387, B:T.533, B:T.534, B:L.537, B:I.590 Hydrogen bonds: B:Q.350, B:Q.376 CLA.73: 14 residues within 4Å: Chain B: V.343, L.347, Q.350, H.351, S.354, I.355, L.511, F.512 Ligands: CLA.70, CLA.72, CLA.80, CLA.82, CLA.84, BCR.89 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:V.343, B:V.343, B:L.347, B:Q.350, B:L.511, B:F.512, B:F.512 Metal complexes: B:H.351 CLA.74: 21 residues within 4Å: Chain B: W.60, N.64, Y.117, S.118, A.370, T.373, H.374, Y.377, F.381, W.649, M.652, I.721, A.725, L.728 Ligands: CLA.60, CLA.61, CLA.62, CLA.63, CLA.75, CLA.76, LMG.91 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:A.370, B:T.373, B:H.374, B:Y.377, B:Y.377, B:F.381, B:I.721, B:I.721, B:A.725, B:L.728 Metal complexes: B:H.374 CLA.75: 25 residues within 4Å: Chain B: I.57, W.60, T.61, S.118, G.119, V.120, W.123, S.186, A.189, L.341, T.345, V.348, M.352, Y.358, L.371, H.374, H.375, I.378, L.382 Ligands: CLA.60, CLA.66, CLA.67, CLA.71, CLA.74, BCR.88 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:I.57, B:W.60, B:T.61, B:V.120, B:W.123, B:A.189, B:V.348, B:I.378, B:L.382 Hydrogen bonds: B:Y.358 pi-Stacking: B:H.374 Metal complexes: B:H.375 CLA.76: 23 residues within 4Å: Chain B: I.25, A.26, N.29, D.30, H.331, L.334, L.338, F.381, G.385, A.388, H.389, I.392, R.396, Y.558, W.576, F.579, V.718 Ligands: CLA.59, CLA.60, CLA.62, CLA.74, BCR.90, LMG.91 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:D.30, B:L.334, B:L.334, B:L.338, B:L.338, B:F.381, B:A.388, B:Y.558, B:F.579, B:F.579, B:V.718 Hydrogen bonds: B:A.28, B:N.29 Salt bridges: B:R.396 Metal complexes: B:H.389 CLA.77: 13 residues within 4Å: Chain A: W.703, A.704, K.707, L.708 Chain B: A.417, H.421, W.424 Chain F: F.169, T.175 Ligands: CLA.41, CLA.78, CLA.84, BCR.95 6 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A, 1 interactions with chain F, Hydrophobic interactions: B:W.424, B:W.424, A:L.708, F:T.175 Salt bridges: B:H.421 Metal complexes: B:H.421 CLA.78: 19 residues within 4Å: Chain B: W.424, L.427, F.428, F.431, H.432 Chain F: F.108, G.112, F.115, L.116, A.119, G.123, W.161 Ligands: CLA.41, BCR.51, CLA.77, CLA.79, CLA.83, BCR.94, BCR.95 15 PLIP interactions: 9 interactions with chain F, 6 interactions with chain B, Hydrophobic interactions: F:F.108, F:F.108, F:F.115, F:F.115, F:L.116, F:L.116, F:A.119, F:W.161, B:W.424, B:W.424, B:F.428, B:F.431 pi-Stacking: F:F.115 Salt bridges: B:H.432 Metal complexes: B:H.432 CLA.79: 24 residues within 4Å: Chain A: V.122 Chain B: G.435, L.436, V.438, H.439, V.442, V.443, K.451, I.453 Chain F: Y.81 Chain H: L.21, L.25, I.28, N.29, D.34, L.35, L.36 Ligands: CLA.10, CLA.43, BCR.51, CLA.78, BCR.94, BCR.99, BCR.101 15 PLIP interactions: 6 interactions with chain H, 8 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: H:L.21, H:L.25, H:L.25, H:L.25, H:L.35, B:L.436, B:V.438, B:V.442, B:V.443, A:V.122 Hydrogen bonds: H:L.35, B:K.451 Salt bridges: B:H.439, B:K.451 Metal complexes: B:H.439 CLA.80: 11 residues within 4Å: Chain B: I.463, V.466, H.467, T.485, W.496, W.500 Ligands: CLA.70, CLA.73, CLA.81, CLA.82, BCR.89 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:I.463, B:V.466, B:T.485 Metal complexes: B:H.467 CLA.81: 9 residues within 4Å: Chain B: I.484, T.485, A.488, Q.493, P.494, W.496 Ligands: CLA.70, CLA.80, BCR.89 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:I.484, B:W.496 CLA.82: 22 residues within 4Å: Chain B: Q.350, Y.353, Y.372, Q.376, A.460, I.463, Q.464, F.512, L.513, I.515, H.523, I.526, L.530, T.593, Y.596, W.597, K.600 Ligands: CLA.72, CLA.73, CLA.80, CLA.83, CLA.84 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:I.463, B:L.513, B:I.515, B:I.526, B:I.526, B:L.530, B:Y.596, B:Y.596, B:W.597, B:K.600 Hydrogen bonds: B:Q.464 Metal complexes: B:H.523 CLA.83: 20 residues within 4Å: Chain B: F.428, L.429, P.457, V.458, F.459, A.460, D.519, F.520, H.523, H.524, A.527, H.531 Chain F: T.98, F.108, T.109 Ligands: CLA.78, CLA.82, CLA.84, BCR.95, BCR.101 17 PLIP interactions: 14 interactions with chain B, 3 interactions with chain F, Hydrophobic interactions: B:F.428, B:F.428, B:F.428, B:L.429, B:L.429, B:F.459, B:F.459, B:F.520, F:T.98, F:F.108, F:F.108 Hydrogen bonds: B:F.459, B:A.460 Salt bridges: B:H.523, B:H.524 pi-Stacking: B:F.520 Metal complexes: B:H.524 CLA.84: 12 residues within 4Å: Chain B: L.422, V.425, A.527, L.530, H.531, T.534 Ligands: CLA.72, CLA.73, CLA.77, CLA.82, CLA.83, BCR.89 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:L.422, B:V.425, B:L.530 Salt bridges: B:H.531 Metal complexes: B:H.531 CLA.85: 28 residues within 4Å: Chain B: T.18, I.21, W.22, L.681, V.682, H.685, V.694, R.695, W.696, K.697, D.698, P.700, V.701 Chain G: I.15, A.19, F.26, E.30 Chain J: I.89, Y.97, A.100 Ligands: CLA.34, CLA.54, CLA.86, PQN.87, BCR.90, BCR.97, BCR.105, BCR.109 11 PLIP interactions: 3 interactions with chain G, 7 interactions with chain B, 1 interactions with chain J, Hydrophobic interactions: G:I.15, G:A.19, G:F.26, B:T.18, B:I.21, B:W.22, B:V.682, B:W.696, B:P.700, J:I.89 Hydrogen bonds: B:K.697 CLA.86: 23 residues within 4Å: Chain A: F.450 Chain B: W.22, F.655, I.659, T.662, M.665, F.666, L.703, L.710, V.711, A.714, H.715 Chain G: M.22 Ligands: CLA.34, CLA.54, CLA.57, CLA.63, CLA.85, PQN.87, BCR.90, LMG.91, BCR.97, BCR.109 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:F.655, B:I.659, B:T.662, B:L.703, B:V.711 Salt bridges: B:H.715 Metal complexes: B:H.715 CLA.96: 5 residues within 4Å: Chain B: F.459 Chain F: D.99, G.100, W.102 Ligands: BCR.95 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain F, Hydrophobic interactions: B:F.459, B:F.459, B:F.459, B:F.459, F:D.99 Metal complexes: F:D.99 CLA.98: 7 residues within 4Å: Chain H: F.19, F.20, G.23, E.27, R.30, F.31 Ligands: BCR.100 6 PLIP interactions: 6 interactions with chain H, Hydrophobic interactions: H:F.19, H:F.20, H:F.31 Salt bridges: H:R.30 pi-Cation interactions: H:R.30 Metal complexes: H:E.27 CLA.102: 9 residues within 4Å: Chain A: F.264, F.265, L.267 Chain I: M.100, V.104, F.137, H.145 Ligands: CLA.21, BCR.47 4 PLIP interactions: 1 interactions with chain I, 3 interactions with chain A, Metal complexes: I:H.145 Hydrophobic interactions: A:F.265, A:F.265, A:L.267 CLA.104: 7 residues within 4Å: Chain I: I.146, I.147, G.150, G.154 Ligands: CLA.18, CLA.23, CLA.37 2 PLIP interactions: 2 interactions with chain I, Hydrophobic interactions: I:I.146, I:I.147 CLA.106: 9 residues within 4Å: Chain J: L.31, N.34, L.35, R.39, L.49, E.50, M.53 Ligands: CLA.107, BCR.110 6 PLIP interactions: 6 interactions with chain J, Hydrophobic interactions: J:L.31, J:N.34, J:E.50, J:M.53 pi-Cation interactions: J:R.39 Metal complexes: J:E.50 CLA.107: 22 residues within 4Å: Chain B: T.688, P.689, L.690, A.691 Chain J: L.35, P.36, A.37, E.50, I.51, A.54, H.55, F.58 Ligands: CLA.33, CLA.34, CLA.35, CLA.39, CLA.54, BCR.105, CLA.106, CLA.108, BCR.109, BCR.110 12 PLIP interactions: 7 interactions with chain J, 5 interactions with chain B, Hydrophobic interactions: J:L.35, J:A.37, J:I.51, J:F.58, J:F.58, B:T.688, B:P.689, B:L.690, B:L.690, B:A.691 Salt bridges: J:H.55 Metal complexes: J:H.55 CLA.108: 12 residues within 4Å: Chain J: Y.57, F.58, G.61, P.62, V.64, E.65, L.141, L.142 Ligands: CLA.34, CLA.35, CLA.107, BCR.110 6 PLIP interactions: 6 interactions with chain J, Hydrophobic interactions: J:Y.57, J:F.58, J:V.64, J:E.65, J:L.141 Hydrogen bonds: J:Y.57

2 x PQN: PHYLLOQUINONE(Non-covalent)

PQN.45: 16 residues within 4Å: Chain A: M.685, F.686, S.689, G.690, R.691, W.694, R.717, A.718, L.719, S.720, G.724 Ligands: CLA.4, CLA.41, CLA.42, CLA.43, BCR.94 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.686, A:F.686, A:R.691, A:W.694, A:L.719, A:L.719, A:L.719 Hydrogen bonds: A:S.689, A:L.719 pi-Stacking: A:W.694 PQN.87: 17 residues within 4Å: Chain B: W.22, M.665, F.666, S.669, W.670, R.671, W.674, I.678, A.702, L.703, A.708 Ligands: CLA.34, CLA.85, CLA.86, BCR.90, LMG.91, BCR.109 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.22, B:W.22, B:F.666, B:F.666, B:R.671, B:W.674, B:I.678, B:L.703, B:L.703, B:L.703, B:A.708 Hydrogen bonds: B:L.703 pi-Stacking: B:W.674

3 x SF4: IRON/SULFUR CLUSTER(Covalent)(Non-covalent)

SF4.46: 12 residues within 4Å: Chain A: C.575, G.577, P.578, C.584, I.721, R.725 Chain B: C.562, G.564, P.565, C.571, W.670, I.705 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B, Metal complexes: A:C.575, A:C.584, A:C.584, B:C.562, B:C.571, B:C.571 SF4.92: 13 residues within 4Å: Chain C: C.21, P.22, T.23, V.25, L.26, C.48, V.49, G.50, C.51, K.52, R.53, C.54, V.67 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.21, C:C.48, C:C.51, C:C.54 SF4.93: 12 residues within 4Å: Chain C: C.11, I.12, C.14, T.15, C.17, A.40, C.54, C.58, P.59, T.60, S.64, I.65 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.11, C:C.14, C:C.17, C:C.58

19 x BCR: BETA-CAROTENE(Non-covalent)

BCR.47: 14 residues within 4Å: Chain A: F.85, T.162, G.165, A.166, L.208, S.212, F.265 Ligands: CLA.6, CLA.15, CLA.17, CLA.21, BCR.48, CLA.102, BCR.103 Ligand excluded by PLIP BCR.48: 12 residues within 4Å: Chain A: G.204, L.208, G.209 Ligands: CLA.6, CLA.7, CLA.13, CLA.14, CLA.15, CLA.20, CLA.21, CLA.30, BCR.47 Ligand excluded by PLIP BCR.49: 12 residues within 4Å: Chain A: F.345, S.354, L.355, A.409, F.412 Ligands: CLA.22, CLA.25, CLA.26, CLA.40, CLA.44, BCR.50, LHG.53 Ligand excluded by PLIP BCR.50: 16 residues within 4Å: Chain A: A.358, S.362, I.402, A.405, G.406, A.409, L.551, V.554 Ligands: CLA.22, CLA.25, CLA.27, CLA.28, CLA.36, CLA.37, CLA.40, BCR.49 Ligand excluded by PLIP BCR.51: 19 residues within 4Å: Chain A: M.672, G.675, A.676, F.678, I.679, L.734, I.737, A.738, W.741 Chain B: V.438 Ligands: CLA.9, CLA.29, CLA.31, CLA.43, CLA.56, CLA.78, CLA.79, BCR.94, BCR.99 Ligand excluded by PLIP BCR.88: 13 residues within 4Å: Chain B: L.65, W.123, W.124, Q.127, M.129, G.138, F.141, L.142, L.145, W.209 Ligands: CLA.67, CLA.68, CLA.75 Ligand excluded by PLIP BCR.89: 15 residues within 4Å: Chain B: F.332, L.336, A.339, V.343, M.383, A.386, F.387, G.390, F.393, L.394 Ligands: CLA.72, CLA.73, CLA.80, CLA.81, CLA.84 Ligand excluded by PLIP BCR.90: 15 residues within 4Å: Chain A: I.446 Chain B: W.651, M.652, F.655, W.674 Ligands: CLA.2, CLA.34, CLA.54, CLA.57, CLA.62, CLA.63, CLA.76, CLA.85, CLA.86, PQN.87 Ligand excluded by PLIP BCR.94: 16 residues within 4Å: Chain A: I.698 Chain B: L.427, F.431 Chain F: F.115, I.118 Chain H: L.25 Ligands: CLA.3, CLA.41, CLA.42, CLA.43, PQN.45, BCR.51, CLA.78, CLA.79, BCR.99, BCR.101 Ligand excluded by PLIP BCR.95: 13 residues within 4Å: Chain B: F.459 Chain F: T.98, G.100, F.108, G.120, G.123, W.124, R.127, W.161 Ligands: CLA.77, CLA.78, CLA.83, CLA.96 Ligand excluded by PLIP BCR.97: 14 residues within 4Å: Chain G: V.13, G.14, P.18 Ligands: CLA.2, CLA.34, CLA.35, CLA.57, CLA.61, CLA.62, CLA.63, CLA.64, CLA.85, CLA.86, BCR.105 Ligand excluded by PLIP BCR.99: 15 residues within 4Å: Chain H: A.22, L.25, N.29 Ligands: CLA.7, CLA.8, CLA.9, CLA.10, CLA.12, CLA.29, CLA.43, BCR.51, CLA.56, CLA.79, BCR.94, BCR.100 Ligand excluded by PLIP BCR.100: 16 residues within 4Å: Chain A: W.119, I.121 Chain H: Y.6, P.11, V.12, T.15, F.19, G.23, I.26, E.27, R.30 Ligands: CLA.4, CLA.10, CLA.12, CLA.98, BCR.99 Ligand excluded by PLIP BCR.101: 20 residues within 4Å: Chain B: F.428, L.429, H.432, L.436, I.455, F.520 Chain F: K.80, L.96, E.107, P.111, L.114 Chain H: N.32, L.35, L.36, V.37, Y.38, P.39 Ligands: CLA.79, CLA.83, BCR.94 Ligand excluded by PLIP BCR.103: 18 residues within 4Å: Chain A: L.211, L.261, F.264, V.303, I.306, V.307, H.310 Chain I: G.111, I.115, A.139, A.142, L.143, I.146 Ligands: CLA.16, CLA.18, CLA.21, CLA.23, BCR.47 Ligand excluded by PLIP BCR.105: 17 residues within 4Å: Chain B: T.688, P.689, L.690 Chain G: I.15 Chain J: F.63, S.82, G.85, L.86, I.89 Ligands: CLA.33, CLA.34, CLA.35, CLA.54, CLA.64, CLA.85, BCR.97, CLA.107 Ligand excluded by PLIP BCR.109: 20 residues within 4Å: Chain B: I.25, V.694 Chain G: M.22, L.25, F.26, I.29 Chain J: I.51, L.90, C.93, L.94, Y.97, W.127 Ligands: CLA.34, CLA.54, CLA.58, CLA.63, CLA.85, CLA.86, PQN.87, CLA.107 Ligand excluded by PLIP BCR.110: 12 residues within 4Å: Chain J: M.53, A.54, Y.57, F.58, G.133, S.134, F.137 Ligands: CLA.33, CLA.35, CLA.106, CLA.107, CLA.108 Ligand excluded by PLIP BCR.111: 11 residues within 4Å: Chain B: L.59, L.150 Chain K: F.8, L.11, A.14, L.15, P.17, A.21, A.25 Ligands: CLA.58, CLA.61 Ligand excluded by PLIP

2 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.52: 22 residues within 4Å: Chain A: W.50, N.51, H.53, A.54, D.55, F.400, R.572, S.720, T.722, Q.723, A.726, A.730, L.733, I.737 Ligands: CLA.4, CLA.5, CLA.7, CLA.9, CLA.12, CLA.29, CLA.31, CLA.43 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.50, A:H.53, A:A.54, A:A.730, A:L.733, A:I.737 Hydrogen bonds: A:N.51, A:D.55, A:S.720, A:T.722 Salt bridges: A:R.572, A:R.572 LHG.53: 10 residues within 4Å: Chain A: H.329, G.331, P.332, F.333, T.334, H.338 Ligands: CLA.25, CLA.32, CLA.44, BCR.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.333, A:T.334

1 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

LMG.91: 21 residues within 4Å: Chain B: W.22, Y.23, I.25, A.26, T.27, S.559, W.576, F.579, V.706, Q.707, L.710, L.713, A.717, V.718, I.721 Ligands: CLA.58, CLA.60, CLA.74, CLA.76, CLA.86, PQN.87 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.22, B:Y.23, B:I.25, B:A.26, B:Q.707, B:Q.707, B:L.713, B:A.717, B:V.718, B:I.721, B:I.721 Hydrogen bonds: B:S.559

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kato, K. et al., Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes. Biorxiv (2022)

Release Date

2022-02-16

Peptides

Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I reaction center subunit II, cyanelle: D
Photosystem I reaction center subunit IV: E
Photosystem I reaction center subunit III: F
Photosystem I reaction center subunit VIII: G
Photosystem I reaction center subunit IX: H
Photosystem I reaction center subunit PsaK 1: I
Photosystem I reaction center subunit XI: J
Photosystem I reaction center subunit XII: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
I

H
J

I
K

J
L

K
M

Membrane

We predict this structure to be a membrane protein.
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Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit II, cyanelle

Photosystem I reaction center subunit IV

Photosystem I reaction center subunit III

Photosystem I reaction center subunit VIII

Photosystem I reaction center subunit IX

Photosystem I reaction center subunit PsaK 1

Photosystem I reaction center subunit XI

Photosystem I reaction center subunit XII

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