SMTL ID : 7duy.1

Crystal structure of VIM-2 MBL in complex with 1-(2-(1H-1,2,3-triazol-1-yl)ethyl)-1H-imidazole-2-carboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.83, H.85, H.148 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.83, A:H.85, A:H.148, H2O.2 ZN.2: 6 residues within 4Å: Chain A: D.87, R.88, C.167, H.209 Ligands: ZN.1, HLL.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.87, A:C.167, A:H.209, H2O.2

1 x HLL: 1-[2-(1,2,3-triazol-1-yl)ethyl]imidazole-2-carboxylic acid(Non-covalent)

HLL.3: 9 residues within 4Å: Chain A: F.31, Y.36, W.56, D.87, H.148, C.167, R.174, H.209 Ligands: ZN.2 11 PLIP interactions: 11 interactions with chain A Water bridges: A:R.174, A:R.174, A:R.174, A:R.174, A:R.174 Salt bridges: A:H.148, A:R.174, A:H.209 pi-Stacking: A:F.31, A:Y.36, A:H.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y.H. et al., Structure-guided optimization of 1H-imidazole-2-carboxylic acid derivatives affording potent VIM-Type metallo-beta-lactamase inhibitors. Eur.J.Med.Chem. (2022)

Release Date

2022-01-19

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

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