SMTL ID : 7e3m.1

RORgamma LBD complexed with Panaxatriol and SRC2.2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x LYS- ILE- LEU- HIS- ARG- LEU- LEU- GLN: LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN(Non-covalent)

LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN.1: 9 residues within 4Å: Chain A: V.68, K.72, M.78, Q.82, Q.85, I.86, P.236, L.237, E.240 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.68, A:K.72, A:Q.85, A:P.236, A:L.237 Hydrogen bonds: A:K.72, A:Q.82, A:E.240, A:E.240, A:E.240

1 x HVL: (3R,5R,6S,8R,9R,10R,12R,13R,14R,17S)-4,4,8,10,14-pentamethyl-17-[(2R)-2,6,6-trimethyloxan-2-yl]-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6,12-triol(Non-covalent)

HVL.2: 19 residues within 4Å: Chain A: Q.22, L.23, W.53, C.56, A.57, H.59, L.60, V.97, M.101, A.104, V.112, F.113, F.114, F.124, L.127, L.132, I.133, I.136, H.215 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.53, A:L.60, A:V.97, A:M.101, A:A.104, A:V.112, A:F.114, A:F.124, A:L.127, A:L.132, A:I.133, A:I.136 Hydrogen bonds: A:F.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z.H. et al., Structure of human RORgammat LBD with SRC2.2 at 2.80 Angstroms resolution. To Be Published

Release Date

2022-03-23

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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