- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.71 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 3 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: Q.11, D.98
- Chain B: K.252
- Ligands: GTP.1
No protein-ligand interaction detected (PLIP)MG.5: 3 residues within 4Å:- Chain B: Q.11, D.177
- Ligands: GDP.4
No protein-ligand interaction detected (PLIP)MG.8: 4 residues within 4Å:- Chain C: Q.11, E.71
- Chain D: K.252
- Ligands: GTP.7
No protein-ligand interaction detected (PLIP)MG.12: 3 residues within 4Å:- Chain D: Q.11, E.69
- Ligands: GTP.10
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.69, H2O.5, H2O.5, H2O.5
MG.13: 4 residues within 4Å:- Chain F: K.74, E.331, N.333
- Ligands: ACP.14
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:E.331, F:E.331
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 7 residues within 4Å:- Chain A: D.39, T.41, G.44, G.45, F.49, N.50, E.55
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.39, A:D.39, A:T.41, A:G.44, A:E.55
CA.9: 6 residues within 4Å:- Chain C: D.39, T.41, G.44, G.45, F.49, E.55
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.39, C:D.39, C:T.41, C:G.44, C:E.55
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.4: 28 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, I.16, A.97, N.99, S.138, G.140, G.141, G.142, T.143, G.144, S.145, V.169, P.171, S.172, V.175, S.176, D.177, E.181, N.204, L.207, Y.222, L.225, N.226, V.229
- Ligands: MG.5
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:Q.11, B:C.12, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:V.175, B:D.177, B:E.181, B:N.204, B:N.204, B:N.226, B:N.226
- Water bridges: B:G.13, B:G.141, B:S.145
- pi-Stacking: B:Y.222, B:Y.222
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 1 x BKU: (1S,2S,3S,5R,6S,16E,18E,20S,21R)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl (2S)-2-{methyl[3-methyl-3-(methyldisulfanyl)butanoyl]amino}propanoate (non-preferred name)(Non-covalent)
- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
ACP.14: 23 residues within 4Å:- Chain F: K.74, P.95, I.148, K.150, I.160, Q.183, K.184, Y.185, L.186, K.198, D.200, R.202, R.222, H.239, L.240, T.241, N.242, D.318, M.320, I.330, E.331, N.333
- Ligands: MG.13
15 PLIP interactions:15 interactions with chain F- Hydrogen bonds: F:K.74, F:K.150, F:K.184, F:L.186, F:K.198, F:D.200, F:R.222, F:R.222, F:T.241, F:N.242, F:N.242, F:N.333, F:N.333
- Salt bridges: F:K.74, F:K.150
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y. et al., C3 Ester Side Chain Plays a Pivotal Role in the Antitumor Activity of Maytansinoids. To Be Published
- Release Date
- 2022-02-23
- Peptides
- Tubulin alpha-1B chain: AC
Tubulin beta-2B chain: BD
Stathmin-4: E
Tubulin tyrosine ligase: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.71 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 3 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 1 x BKU: (1S,2S,3S,5R,6S,16E,18E,20S,21R)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl (2S)-2-{methyl[3-methyl-3-(methyldisulfanyl)butanoyl]amino}propanoate (non-preferred name)(Non-covalent)
- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y. et al., C3 Ester Side Chain Plays a Pivotal Role in the Antitumor Activity of Maytansinoids. To Be Published
- Release Date
- 2022-02-23
- Peptides
- Tubulin alpha-1B chain: AC
Tubulin beta-2B chain: BD
Stathmin-4: E
Tubulin tyrosine ligase: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
F