- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- hetero-2-2-1-1-mer
- Ligands
- 3 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: Q.11
- Chain B: K.252
- Ligands: GTP.1
No protein-ligand interaction detected (PLIP)MG.11: 4 residues within 4Å:- Chain B: Q.11
- Chain C: N.249, V.250, E.254
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:E.254, C:E.254, H2O.1, H2O.2, H2O.3
MG.13: 5 residues within 4Å:- Chain C: Q.11, E.71, D.98
- Chain D: K.252
- Ligands: GTP.12
No protein-ligand interaction detected (PLIP)MG.16: 5 residues within 4Å:- Chain D: Q.11, D.67, E.69, T.143
- Ligands: GTP.18
No protein-ligand interaction detected (PLIP)MG.20: 3 residues within 4Å:- Chain F: K.74, N.333
- Ligands: ACP.21
No protein-ligand interaction detected (PLIP)- 7 x CA: CALCIUM ION(Non-covalent)
CA.3: 8 residues within 4Å:- Chain A: D.39, T.41, G.44, G.45, D.47, F.49, N.50, E.55
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:T.41, A:E.55, A:E.55
CA.4: 5 residues within 4Å:- Chain A: S.158, K.166, E.196, H.197
- Chain E: D.42
No protein-ligand interaction detected (PLIP)CA.6: 1 residues within 4Å:- Chain B: D.118
No protein-ligand interaction detected (PLIP)CA.7: 1 residues within 4Å:- Chain B: E.111
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:E.111
CA.14: 6 residues within 4Å:- Chain C: D.39, I.42, G.43, E.55, G.59, H.61
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:E.55
CA.15: 8 residues within 4Å:- Chain C: D.39, T.41, G.44, G.45, D.47, F.49, N.50, E.55
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.39, C:D.39, C:T.41, C:D.47, C:E.55
CA.17: 2 residues within 4Å:- Chain D: V.175, Y.222
No protein-ligand interaction detected (PLIP)- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 1 x W4Q: 1-(2-chloranyl-3,5-dimethoxy-phenyl)-2-(4-fluorophenyl)-3-methyl-6-phenyl-pyridin-4-one(Non-covalent)
W4Q.8: 19 residues within 4Å:- Chain B: V.175, S.176, D.177, N.204, E.205, Y.208, P.220, T.221, Y.222, L.225
- Chain C: L.248, P.325, V.328, N.329, I.332, V.353, G.354, I.355
- Ligands: GDP.10
14 PLIP interactions:9 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:D.177, B:N.204, B:Y.208, B:Y.208, B:Y.222, B:L.225, B:L.225, C:L.248, C:L.248, C:I.355
- Hydrogen bonds: B:Y.222, C:N.329
- pi-Stacking: B:Y.222
- Halogen bonds: C:P.325
- 2 x LOC: N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide(Non-covalent)
LOC.9: 29 residues within 4Å:- Chain A: N.101, S.178, T.179, A.180, V.181
- Chain B: V.236, T.237, C.239, L.240, L.246, A.248, D.249, L.250, K.252, L.253, N.256, M.257, T.312, V.313, A.314, A.315, I.316, N.347, N.348, V.349, K.350, T.351, A.352, I.368
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:A.248, B:K.252, B:L.253, B:L.253, B:A.314
- Hydrogen bonds: B:K.350, B:K.350, A:T.179, A:V.181
LOC.19: 27 residues within 4Å:- Chain C: N.101, S.178, T.179, A.180, V.181
- Chain D: V.236, T.237, C.239, L.240, L.246, A.248, D.249, K.252, L.253, N.256, M.257, T.312, V.313, A.314, A.315, I.316, N.348, V.349, K.350, T.351, A.352, I.368
8 PLIP interactions:7 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:L.246, D:A.248, D:K.252, D:L.253, D:N.256, D:A.314, D:K.350
- Hydrogen bonds: C:V.181
- 1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.10: 22 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, I.16, A.97, N.99, S.138, G.140, G.141, G.142, T.143, G.144, S.145, V.169, S.176, D.177, N.204, Y.222, L.225, N.226
- Ligands: W4Q.8
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:Q.11, B:C.12, B:N.99, B:S.138, B:G.142, B:T.143, B:T.143, B:T.143, B:G.144, B:D.177, B:N.204, B:N.226, B:N.226, B:N.226
- Water bridges: B:T.143, B:T.143, B:Y.222
- pi-Stacking: B:Y.222, B:Y.222
- 1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
ACP.21: 22 residues within 4Å:- Chain F: K.74, P.95, I.148, I.160, Q.183, K.184, Y.185, L.186, K.198, D.200, R.202, R.222, H.239, L.240, T.241, N.242, D.318, M.320, I.330, E.331, N.333
- Ligands: MG.20
14 PLIP interactions:14 interactions with chain F- Hydrogen bonds: F:K.74, F:Q.183, F:L.186, F:K.198, F:D.200, F:D.200, F:R.202, F:R.222, F:R.222, F:T.241, F:T.241, F:N.242, F:N.333
- Salt bridges: F:K.74
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yan, W. et al., Crystal structure of T2R-TTL-IKP104-Colchicine. To Be Published
- Release Date
- 2025-11-05
- Peptides
- Detyrosinated tubulin alpha-1B chain: AC
Tubulin beta chain: BD
Stathmin-4: E
Tubulin tyrosine ligase: F - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
F
SMTL ID : 9kbn.1
Crystal structure of T2R-TTL-IKP104-Colchicine
Detyrosinated tubulin alpha-1B chain
Tubulin beta chain
Stathmin-4
Tubulin tyrosine ligase
Related Entries With Identical Sequence
4i4t.1 | 4i50.1 | 4i55.1 | 4ihj.1 | 4iij.1 | 4o2a.1 | 4o2b.1 | 4o4h.1 | 4o4i.1 | 4o4j.1 | 4o4l.1 | 4tuy.1 | 4tv8.1 | 4tv9.1 | 4yj2.1 | 4yj3.1 | 4zhq.1 | 4zi7.1 | 4zol.1 | 5bmv.1 | 5c8y.1 | 5ca0.1 | 5ca1.1 | 5cb4.1 | 5ezy.1 | 5fnv.1 | 5gon.1 | 5h74.1 | 5h7o.1 | 5iyz.1 more...less...5j2t.1 | 5j2u.1 | 5jh7.1 | 5jqg.1 | 5jvd.1 | 5kx5.1 | 5la6.1 | 5lov.1 | 5lp6.1 | 5lxs.1 | 5lxt.1 | 5lyj.1 | 5m7e.1 | 5m7g.1 | 5m8d.1 | 5m8g.1 | 5mf4.1 | 5nfz.1 | 5ng1.1 | 5njh.1 | 5o7a.1 | 5osk.1 | 5ov7.1 | 5s4l.1 | 5s4m.1 | 5s4n.1 | 5s4o.1 | 5s4p.1 | 5s4q.1 | 5s4r.1 | 5s4s.1 | 5s4t.1 | 5s4u.1 | 5s4v.1 | 5s4w.1 | 5s4x.1 | 5s4y.1 | 5s4z.1 | 5s50.1 | 5s51.1 | 5s52.1 | 5s53.1 | 5s54.1 | 5s55.1 | 5s56.1 | 5s57.1 | 5s58.1 | 5s59.1 | 5s5a.1 | 5s5b.1 | 5s5c.1 | 5s5d.1 | 5s5e.1 | 5s5f.1 | 5s5g.1 | 5s5h.1 | 5s5i.1 | 5s5j.1 | 5s5k.1 | 5s5l.1 | 5s5m.1 | 5s5n.1 | 5s5o.1 | 5s5p.1 | 5s5q.1 | 5s5r.1 | 5s5s.1 | 5s5t.1 | 5s5u.1 | 5s5v.1 | 5s5w.1 | 5s5x.1 | 5s5y.1 | 5s5z.1 | 5s60.1 | 5s61.1 | 5s62.1 | 5s63.1 | 5s64.1 | 5s65.1 | 5s66.1 | 5s67.1 | 5sb3.1 | 5sb4.1 | 5sb5.1 | 5sb6.1 | 5sb7.1 | 5sb8.1 | 5sb9.1 | 5sba.1 | 5sbb.1 | 5sbc.1 | 5sbd.1 | 5sbe.1 | 5xhc.1 | 5xi5.1 | 5xi7.1 | 5xiw.1 | 5xke.1 | 5xkf.1 | 5xkg.1 | 5xkh.1 | 5xlt.1 | 5xlz.1 | 5xp3.1 | 5yl2.1 | 5yl4.1 | 5ylj.1 | 5yls.1 | 5yz3.1 | 5z4p.1 | 5z4u.1 | 5zxh.1 | 6agk.1 | 6br1.1 | 6brf.1 | 6bry.1 | 6bs2.1 | 6d88.1 | 6eg5.1 | 6f7c.1 | 6fii.1 | 6fjf.1 | 6fjm.1 | 6fkj.1 | 6fkl.1 | 6gf3.1 | 6gj4.1 | 6hx8.1 | 6i5c.1 | 6jcj.1 | 6k9v.1 | 6knz.1 | 6kpp.1 | 6lsm.1 | 6lsn.1 | 6n47.1 | 6nng.1 | 6o5m.1 | 6o5n.1 | 6o61.1 | 6pc4.1 | 6qqn.1 | 6qtn.1 | 6ses.1 | 6x1c.1 | 6x1e.1 | 6x1f.1 | 6y4m.1 | 6y4n.1 | 6y6d.1 | 7au5.1 | 7cda.1 | 7ce6.1 | 7ce8.1 | 7cek.1 | 7cld.1 | 7cnm.1 | 7cnn.1 | 7cno.1 | 7dad.1 | 7dae.1 | 7daf.1 | 7db9.1 | 7dba.1 | 7dbb.1 | 7dbc.1 | 7dbd.1 | 7dp8.1 | 7e4p.1 | 7e4q.1 | 7e4r.1 | 7e4y.1 | 7e4z.1 | 7emj.1 | 7en3.1 | 7exc.1 | 7l05.1 | 7lz7.1 | 7lz8.1 | 7ogn.1 | 7vmg.1 | 7vmj.1 | 7vmk.1 | 7xqx.1 | 7xqy.1 | 7xr0.1 | 7xr1.1 | 7z2n.1 | 7z2p.1 | 7z7d.1 | 7zx2.1 | 7zyw.1 | 8a0l.1 | 8a9t.1 | 8a9z.1 | 8ahm.1 | 8b7a.1 | 8b7b.1 | 8b7c.1 | 8bde.1 | 8bdf.1 | 8bdg.1 | 8c0f.1 | 8cl9.1 | 8clb.1 | 8cld.1 | 8cle.1 | 8clf.1 | 8clg.1 | 8diq.1 | 8huh.1 | 8r67.1 | 8r6o.1 | 8riv.1 | 8riw.1 | 8wmu.1 | 8yem.1 | 8yer.1 | 8yeu.1 | 8yrk.1 | 8ytx.1 | 8yu9.1 | 8yua.1 | 8zb8.1 | 9fyd.1 | 9gmy.1 | 9gnu.1 | 9h31.1 | 9h32.1 | 9h33.1 | 9h34.1 | 9im5.1 | 9imo.1 | 9k7e.1 | 9kbl.1 | 9lnl.1 | 9lnv.1 | 9lnw.1 | 9lnx.1