- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x J1O: 4-[[(2R)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]butanoic acid(Non-covalent)
J1O.2: 15 residues within 4Å:- Chain A: N.59, S.61, S.62, G.63, R.64, R.65, A.178, A.179, A.180, V.181, F.230, L.232, N.258, R.263
- Ligands: ANP.1
19 PLIP interactions:17 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.232
- Hydrogen bonds: A:N.59, A:S.62, A:S.62, A:S.62, A:G.63, A:R.64, A:R.65, A:R.65, A:R.65, A:A.178, A:A.179, A:V.181, A:N.258
- Water bridges: A:G.43, A:G.66, B:K.195
- Salt bridges: A:R.263, B:K.195
J1O.9: 15 residues within 4Å:- Chain B: N.59, S.61, S.62, G.63, R.64, R.65, A.178, A.179, A.180, V.181, F.230, L.232, N.258, R.263
- Ligands: ANP.8
18 PLIP interactions:16 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.232
- Hydrogen bonds: B:N.59, B:S.62, B:S.62, B:S.62, B:G.63, B:R.64, B:R.65, B:R.65, B:R.65, B:A.178, B:V.181, B:N.258
- Water bridges: B:G.43, B:G.66, A:K.195
- Salt bridges: B:R.263, A:K.195
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: D.183, K.212
- Chain B: K.195
- Ligands: ANP.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.183, H2O.1, H2O.2
MG.10: 4 residues within 4Å:- Chain A: K.195
- Chain B: D.183, K.212
- Ligands: ANP.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.183, H2O.5, H2O.6
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: G.15, A.16, A.17, R.18
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.15, A:A.17, A:R.18
- Salt bridges: A:R.18
SO4.7: 5 residues within 4Å:- Chain A: K.46, R.85, R.87, T.150
- Chain B: F.60
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.85, A:R.87
- Salt bridges: A:K.46, A:R.85, A:R.87
SO4.13: 4 residues within 4Å:- Chain A: F.60
- Chain B: K.46, R.85, R.87
8 PLIP interactions:1 interactions with chain A, 7 interactions with chain B- Water bridges: A:S.61, B:A.86, B:R.87, B:R.87, B:R.87
- Salt bridges: B:K.46, B:R.85, B:R.87
SO4.14: 3 residues within 4Å:- Chain B: F.10, P.11, Q.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.12, B:Q.12
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 2 residues within 4Å:- Chain A: N.241, R.244
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.241, A:N.241, A:R.244
GOL.6: 8 residues within 4Å:- Chain A: P.107, G.109, P.110, A.111, L.116
- Chain B: E.122, A.129, R.133
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.133, B:R.133, A:A.111
- Water bridges: B:G.127
GOL.11: 3 residues within 4Å:- Chain B: I.240, N.241, R.244
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.241, B:N.241, B:R.244
GOL.12: 3 residues within 4Å:- Chain B: R.18, W.19, V.22
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.18, B:W.19
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mostert, K.J. et al., The Coenzyme A Level Modulator Hopantenate (HoPan) Inhibits Phosphopantotenoylcysteine Synthetase Activity. Acs Chem.Biol. (2021)
- Release Date
- 2021-11-24
- Peptides
- Phosphopantothenate--cysteine ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x J1O: 4-[[(2R)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]butanoic acid(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mostert, K.J. et al., The Coenzyme A Level Modulator Hopantenate (HoPan) Inhibits Phosphopantotenoylcysteine Synthetase Activity. Acs Chem.Biol. (2021)
- Release Date
- 2021-11-24
- Peptides
- Phosphopantothenate--cysteine ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A