SMTL ID : 7eic.1 (1 other biounit)

Crystal structure of AF9 YEATS domain in complex with H4K5acK8ac peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain B: P.67, R.68, R.71 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.68 GOL.2: 6 residues within 4Å: Chain B: R.23, Q.25, D.38, W.39, M.40, E.81 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.38, B:E.81, B:E.81 Water bridges: B:W.39

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain B: E.100, E.101, P.102, N.132, P.134, T.135, F.138 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.132, B:T.135, B:T.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kikuchi, M. et al., Elucidation of binding preferences of YEATS domains to site-specific acetylated nucleosome core particles. J.Biol.Chem. (2022)

Release Date

2022-04-06

Peptides

Histone H4: A
Protein AF-9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Histone H4

Protein AF-9

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