SMTL ID : 7eic.2 (1 other biounit)

Crystal structure of AF9 YEATS domain in complex with H4K5acK8ac peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: H.63, E.64, F.88, I.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.64, A:I.89 GOL.2: 4 residues within 4Å: Chain A: H.61, L.62, E.64, P.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.61

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: R.23, M.40, R.44, P.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.23, A:R.23, A:R.44 Water bridges: A:Y.78 PEG.4: 3 residues within 4Å: Chain A: C.126, E.127, K.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kikuchi, M. et al., Elucidation of binding preferences of YEATS domains to site-specific acetylated nucleosome core particles. J.Biol.Chem. (2022)

Release Date

2022-04-06

Peptides

Protein AF-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein AF-9

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