SMTL ID : 7em3.1

Crystal structure of the PI5P4Kbeta-2a-ATP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

1 x CX0: [(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate(Non-covalent)

CX0.1: 10 residues within 4Å: Chain A: V.125, T.178, R.179, N.180, V.181, F.182, T.214, L.259, I.345, D.346 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.178, A:T.178, A:N.180, A:V.181, A:F.182, A:D.346 pi-Cation interactions: A:F.182

1 x CXC: [[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

CXC.2: 10 residues within 4Å: Chain A: K.73, Y.75, S.131, V.134, A.135, H.138, N.139, R.165, E.172, Y.174 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.75, A:S.131, A:A.135, A:A.135, A:N.139, A:E.172, A:E.172 Salt bridges: A:K.73, A:K.73, A:R.165, A:R.165, A:R.165 pi-Stacking: A:H.138, A:H.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeuchi, K. et al., The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity. Structure (2022)

Release Date

2022-03-30

Peptides

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta

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