SMTL ID : 7es0.1

a rice glycosyltransferase in complex with UDP and REX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x 3E6: Rebaudioside A2(Non-covalent)

3E6.1: 17 residues within 4Å: Chain A: W.22, A.24, H.27, T.88, H.93, V.129, F.130, M.155, R.162, L.204, A.205, F.208, E.283, P.285, F.379, G.380, D.381 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.129, A:V.129, A:F.130, A:L.204, A:F.208, A:D.381 Hydrogen bonds: A:W.22, A:H.27, A:H.27, A:H.93, A:D.381 Water bridges: A:H.93, A:R.162, A:S.203, A:S.203

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 16 residues within 4Å: Chain A: G.26, L.29, R.255, G.281, S.282, E.283, W.339, V.340, Q.342, H.357, G.359, W.360, N.361, S.362, E.365, Q.382 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.26, A:R.255, A:R.255, A:S.282, A:E.283, A:V.340, A:V.340, A:Q.342, A:N.361, A:N.361, A:S.362, A:E.365 Water bridges: A:L.280, A:W.360, A:Q.382, A:Q.382, A:Q.382, A:Q.382 Salt bridges: A:H.357, A:H.357 pi-Stacking: A:W.339

1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.3: 2 residues within 4Å: Chain A: E.299, R.409 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.409 Salt bridges: A:R.409

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: K.273, L.346, A.347, H.348, A.349, V.351, F.369, H.371, Q.437 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.273, A:H.348, A:V.351, A:Q.437

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: F.25, R.56, W.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.56 EDO.6: 4 residues within 4Å: Chain A: S.40, R.61, A.63, L.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.40, A:R.61, A:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Catalytic flexibility of rice glycosyltransferase OsUGT91C1 for the production of palatable steviol glycosides. Nat Commun (2021)

Release Date

2021-12-08

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase

Related Entries With Identical Sequence