SMTL ID : 7esi.1

Crystal structure of the collagenase unit of a Vibrio collagenase from Vibrio harveyi VHJR7 at 1. 8 angstrom resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.477, H.481, E.505, Y.549 Chain B: H.13 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Metal complexes: B:H.13, A:H.477, A:H.481, A:E.505, A:E.505

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.446, G.485, L.489, Y.490, G.491 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.446, A:G.485, A:L.489, A:G.491, H2O.4, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Structure of Vibrio collagenase VhaC provides insight into the mechanism of bacterial collagenolysis. Nat Commun (2022)

Release Date

2022-02-09

Peptides

Collagenase unit (CU): A
Peptide P1: B
Peptide P2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Collagenase unit (CU)

Peptide P1

Peptide P2

Related Entries With Identical Sequence