SMTL ID : 7vlz.1

Crystal structure of the collagenase unit of a Vibrio collagenase from Vibrio harveyi VHJR7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.477, H.481, E.505, Y.549 Chain B: H.13 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.477, A:H.481, A:E.505, A:E.505, B:H.13

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.446, G.485, L.489, Y.490, G.491 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.446, A:G.485, A:L.489, A:G.491, H2O.11, H2O.14 CA.3: 3 residues within 4Å: Chain A: N.376, D.421, E.462 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.376, A:D.421, A:E.462, H2O.16, H2O.23 CA.4: 1 residues within 4Å: Chain A: T.529 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.529, H2O.18, H2O.19, H2O.21, H2O.33 CA.5: 3 residues within 4Å: Chain A: T.523, D.526, S.528 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.523, A:D.526, A:S.528, A:S.528, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystal structure of the collagenase unit of a Vibrio collagenase from Vibrio harveyi VHJR7. To Be Published

Release Date

2022-10-19

Peptides

collagenase: A
Peptide P1: B
Peptide P2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

collagenase

Peptide P1

Peptide P2

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