SMTL ID : 7evj.1

Crystal structure of CBP bromodomain liganded with 9c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x JE9: 3-acetyl-1-((3-(1-cyclopropyl-1H-pyrazol-4-yl)-2-fluoro-5-(hydroxymethyl)phenyl)carbamoyl)indolizin-7-yl dimethylcarbamate(Non-covalent)

JE9.1: 11 residues within 4Å: Chain A: L.45, P.46, F.47, Q.49, V.51, L.56, I.58, Y.103, N.104, R.109, V.110 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.45, A:P.46, A:F.47, A:V.51, A:I.58, A:Y.103, A:V.110, A:V.110 Hydrogen bonds: A:P.46, A:N.104, A:R.109 Water bridges: A:Q.49

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: S.108, R.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.109

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: T.73, K.77, Q.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, Q. et al., Design, Synthesis, and Biological Evaluation of 1-(Indolizin-3-yl)ethan-1-ones as CBP Bromodomain Inhibitors for the Treatment of Prostate Cancer. J.Med.Chem. (2022)

Release Date

2022-02-16

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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