SMTL ID : 7f2a.1 (1 other biounit)

Crystal structure of Neisseria meningitidis EarP bound TDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)

TYD.1: 18 residues within 4Å: Chain A: D.16, N.17, F.18, G.19, L.52, F.185, Y.187, A.211, F.249, V.250, P.251, Q.252, F.255, R.268, G.269, E.270, D.271, S.272 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.185, A:A.211, A:F.249, A:F.255 Hydrogen bonds: A:F.18, A:G.19, A:Y.187, A:V.250, A:V.250, A:Q.252, A:E.270, A:D.271, A:S.272 Salt bridges: A:R.268 pi-Stacking: A:F.249

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: F.185, G.186, G.212, T.213, Q.214, R.268 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.213, A:Q.214, A:Q.214 Salt bridges: A:R.268 SO4.3: 4 residues within 4Å: Chain A: F.163, D.164, R.171, K.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.164 Salt bridges: A:R.171, A:K.257 SO4.4: 4 residues within 4Å: Chain A: H.346, Q.347, N.348, G.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.348, A:N.348, A:G.349 Salt bridges: A:H.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoo, Y., Crystal structure of Neisseria meningitidis EarP bound TDP. To Be Published

Release Date

2022-06-15

Peptides

Elongation factor P maturation arginine rhamnosyltransferase EarP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor P maturation arginine rhamnosyltransferase EarP

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