SMTL ID : 7vch.1 (1 other biounit)

Crystal structure of Neisseria meningitidis EarP bound TDP-L-Rhamnose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x TRH: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE(Non-covalent)

TRH.1: 21 residues within 4Å: Chain A: D.16, N.17, F.18, G.19, D.20, L.52, Y.115, F.185, Y.187, A.211, F.249, V.250, P.251, Q.252, F.255, R.268, G.269, E.270, D.271, S.272, Y.288 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.185, A:A.211, A:F.255, A:F.255, A:Y.288 Hydrogen bonds: A:N.17, A:F.18, A:G.19, A:D.20, A:Y.187, A:V.250, A:V.250, A:Q.252, A:E.270, A:D.271, A:S.272 Salt bridges: A:R.268 pi-Stacking: A:F.249, A:F.255

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: N.17, G.212, T.213, Q.214, R.268 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.213, A:T.213, A:Q.214, A:Q.214 Salt bridges: A:R.268 SO4.3: 5 residues within 4Å: Chain A: F.163, D.164, A.167, R.171, K.257 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.164, A:D.164 Salt bridges: A:R.171, A:K.257 SO4.4: 3 residues within 4Å: Chain A: H.346, N.348, G.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.348, A:N.348, A:G.349 Salt bridges: A:H.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoo, Y., Crystal structure of Neisseria meningitidis EarP bound TDP-L-Rhamnose. To Be Published

Release Date

2022-12-14

Peptides

Elongation factor P maturation arginine rhamnosyltransferase EarP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor P maturation arginine rhamnosyltransferase EarP

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