- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 1XK: 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide(Non-covalent)
- 2 x HFG: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one(Non-covalent)
HFG.2: 19 residues within 4Å:- Chain A: P.87, E.88, V.89, P.108, T.109, E.111, R.140, W.157, E.159, H.161, F.204, T.228, H.230, S.258, W.259, G.260
- Ligands: OXM.4, FMT.9, EDO.15
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.157, A:E.159, A:F.204
- Hydrogen bonds: A:T.109, A:T.109, A:R.140
- Water bridges: A:R.140
HFG.17: 18 residues within 4Å:- Chain B: P.87, E.88, V.89, P.108, T.109, E.111, R.140, W.157, E.159, H.161, F.204, T.228, H.230, S.258, W.259, G.260
- Ligands: OXM.18, ACT.20
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.157, B:E.159, B:F.204
- Hydrogen bonds: B:T.109, B:R.140, B:S.258
- Water bridges: B:R.140
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 2 x OXM: OXAMIC ACID(Non-covalent)
OXM.4: 7 residues within 4Å:- Chain A: R.140, Q.225, T.228, H.230
- Ligands: 1XK.1, HFG.2, EDO.15
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.225
- Water bridges: A:R.140, A:T.228
- Salt bridges: A:R.140
OXM.18: 7 residues within 4Å:- Chain B: R.140, Q.225, T.228, H.230
- Ligands: 1XK.16, HFG.17, ACT.20
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.225
- Water bridges: B:R.140, B:Q.225
- Salt bridges: B:R.140
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: V.193, I.194, K.195, F.472
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.193, A:K.195, A:D.473
- Water bridges: A:F.472
EDO.6: 6 residues within 4Å:- Chain A: S.13, Y.16, T.147, L.150, M.271, Y.500
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.13, A:Y.500
EDO.7: 5 residues within 4Å:- Chain A: W.141, F.143, R.153
- Chain B: Y.95, L.100
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.153, A:R.153
- Water bridges: A:S.32, A:S.32, A:S.32
EDO.15: 4 residues within 4Å:- Chain A: F.204, H.230
- Ligands: HFG.2, OXM.4
No protein-ligand interaction detected (PLIP)EDO.19: 6 residues within 4Å:- Chain B: F.12, S.13, Y.16, L.150, M.271, Y.500
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.500
EDO.27: 6 residues within 4Å:- Chain B: Y.35, M.37, E.154, F.155, L.156, T.263
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.35, B:L.156, B:T.263, B:T.263
- Water bridges: B:Y.35
- 13 x FMT: FORMIC ACID(Non-functional Binders)
FMT.8: 5 residues within 4Å:- Chain A: E.167, W.171, K.208, K.209, L.231
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.167, A:K.208
FMT.9: 3 residues within 4Å:- Chain A: P.87, E.88
- Ligands: HFG.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.88
FMT.10: 5 residues within 4Å:- Chain A: S.410, T.411, C.483, F.484, G.487
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.410, A:G.487
FMT.11: 5 residues within 4Å:- Chain A: K.208, L.232, G.233, T.234, N.235
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.234, A:N.235
FMT.12: 2 residues within 4Å:- Chain A: Q.289, D.320
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.289
- Water bridges: A:R.322, A:R.322
FMT.13: 3 residues within 4Å:- Chain A: L.394, K.397, R.401
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.397, A:K.397, A:R.401, A:R.401
FMT.14: 2 residues within 4Å:- Chain A: R.151, R.222
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.151, A:R.151, A:N.220
FMT.21: 1 residues within 4Å:- Chain B: P.471
No protein-ligand interaction detected (PLIP)FMT.22: 1 residues within 4Å:- Chain B: L.175
No protein-ligand interaction detected (PLIP)FMT.23: 3 residues within 4Å:- Chain B: E.46, K.47, R.50
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.46
- Water bridges: B:R.50, B:R.50
FMT.24: 3 residues within 4Å:- Chain B: E.186, P.192, V.193
No protein-ligand interaction detected (PLIP)FMT.25: 2 residues within 4Å:- Chain B: R.151, R.222
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.151, B:R.222
- Water bridges: B:R.151, B:N.220
FMT.26: 3 residues within 4Å:- Chain B: W.171, E.172, L.175
2 PLIP interactions:2 interactions with chain B- Water bridges: B:E.172, B:E.172
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malhotra, N. et al., TgPRS with double inhibitors. To Be Published
- Release Date
- 2022-10-05
- Peptides
- Prolyl-tRNA synthetase (ProRS): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.49 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 1XK: 4-[(3S)-3-cyclopropyl-3-(hydroxymethyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide(Non-covalent)
- 2 x HFG: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one(Non-covalent)
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 2 x OXM: OXAMIC ACID(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 13 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malhotra, N. et al., TgPRS with double inhibitors. To Be Published
- Release Date
- 2022-10-05
- Peptides
- Prolyl-tRNA synthetase (ProRS): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B