- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 1TI: 4-[(3S)-3-cyano-3-(1-methylcyclopropyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide(Non-covalent)
- 2 x 9SF: 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one(Non-covalent)
9SF.2: 18 residues within 4Å:- Chain A: F.85, E.88, P.108, T.109, E.111, R.140, W.157, E.159, H.161, F.204, T.228, H.230, S.258, W.259, G.260
- Ligands: 1TI.1, CL.11, CL.12
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.85, A:P.108, A:P.108, A:W.157, A:E.159, A:F.204
- Hydrogen bonds: A:T.109, A:T.109, A:R.140
- Water bridges: A:R.140
- pi-Stacking: A:F.85, A:F.85
9SF.14: 18 residues within 4Å:- Chain B: F.85, E.88, P.108, T.109, E.111, R.140, W.157, E.159, H.161, F.204, T.228, H.230, S.258, W.259, G.260
- Ligands: 1TI.13, CL.23, CL.24
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:F.85, B:P.108, B:P.108, B:W.157, B:E.159, B:F.204
- Hydrogen bonds: B:T.109, B:R.140
- Water bridges: B:R.140
- pi-Stacking: B:F.85, B:F.85
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.3: 17 residues within 4Å:- Chain A: F.42, W.45, Q.49, Y.65, R.107, W.135, C.136, S.137, L.156
- Chain B: Y.65, R.107, W.135, C.136, S.137, L.156
- Ligands: MES.15, EDO.17
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.49, A:R.107, A:S.137, B:S.137
- Water bridges: B:R.107
MES.15: 17 residues within 4Å:- Chain A: Y.65, R.107, W.135, C.136, S.137, L.156
- Chain B: F.42, W.45, Q.49, Y.65, R.107, W.135, C.136, S.137, L.156
- Ligands: MES.3, EDO.5
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.49, B:Y.65, B:R.107, B:S.137, A:S.137
- Water bridges: A:R.107
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: F.12, S.13, T.147, L.150, Y.500
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.13, A:T.147
EDO.5: 9 residues within 4Å:- Chain A: Q.49, D.53, N.63, W.135
- Chain B: F.42, E.46, Q.49
- Ligands: MES.15, EDO.17
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.49, A:Q.49
- Water bridges: B:R.50
EDO.6: 6 residues within 4Å:- Chain A: E.186, P.192, V.193, I.194, F.395, H.403
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.186
- Water bridges: A:K.195
EDO.7: 6 residues within 4Å:- Chain A: E.197, I.470, P.471, F.472, Q.474, R.492
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.197, A:E.197, A:R.492
EDO.8: 3 residues within 4Å:- Chain A: R.222, G.463
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.222, A:G.463
EDO.9: 3 residues within 4Å:- Chain A: R.222, G.463
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.463
- Water bridges: A:R.222
EDO.10: 5 residues within 4Å:- Chain A: K.120, W.121
- Chain B: E.24, E.27, R.38
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.24, B:R.38, B:R.38
EDO.16: 5 residues within 4Å:- Chain B: F.12, S.13, T.147, L.150, Y.500
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.13, B:T.147, B:T.147, B:Y.500
EDO.17: 9 residues within 4Å:- Chain A: F.42, E.46, Q.49
- Chain B: Q.49, D.53, N.63, W.135
- Ligands: MES.3, EDO.5
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.49, A:Q.49
- Water bridges: A:R.50
EDO.18: 6 residues within 4Å:- Chain B: E.186, P.192, V.193, I.194, F.395, H.403
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.186
- Water bridges: B:K.195
EDO.19: 6 residues within 4Å:- Chain B: E.197, I.470, P.471, F.472, Q.474, R.492
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.197, B:R.492
EDO.20: 3 residues within 4Å:- Chain B: R.222, G.463
- Ligands: EDO.21
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.222, B:G.463
EDO.21: 3 residues within 4Å:- Chain B: R.222, G.463
- Ligands: EDO.20
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.463
- Water bridges: B:R.222
EDO.22: 5 residues within 4Å:- Chain A: E.24, E.27, R.38
- Chain B: K.120, W.121
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.24, A:E.24, A:R.38, A:R.38
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.11: 3 residues within 4Å:- Chain A: R.140
- Ligands: 1TI.1, 9SF.2
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain A: F.85, F.204
- Ligands: 9SF.2
Ligand excluded by PLIPCL.23: 3 residues within 4Å:- Chain B: R.140
- Ligands: 1TI.13, 9SF.14
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain B: F.85, F.204
- Ligands: 9SF.14
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malhotra, N. et al., TgPRS with double inhibitors. To Be Published
- Release Date
- 2022-09-07
- Peptides
- Prolyl-tRNA synthetase (ProRS): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 1TI: 4-[(3S)-3-cyano-3-(1-methylcyclopropyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide(Non-covalent)
- 2 x 9SF: 3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Malhotra, N. et al., TgPRS with double inhibitors. To Be Published
- Release Date
- 2022-09-07
- Peptides
- Prolyl-tRNA synthetase (ProRS): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A