SMTL ID : 7fc5.1

Crystal structure of SARS-CoV-2 RBD and horse ACE2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.6, G.7, F.10, N.11, V.35 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.10 Hydrogen bonds: A:N.11 NAG.2: 2 residues within 4Å: Chain B: N.72, T.74 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.74 NAG.3: 4 residues within 4Å: Chain B: N.35, T.37, E.39, N.40 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.35, B:E.39, B:N.40 NAG.4: 4 residues within 4Å: Chain B: A.402, D.525, S.527, N.528 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.402 Hydrogen bonds: B:A.402 NAG.5: 1 residues within 4Å: Chain B: N.304 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, J. et al., Structural insights into the binding of SARS-CoV-2, SARS-CoV, and hCoV-NL63 spike receptor-binding domain to horse ACE2. Structure (2022)

Release Date

2022-06-22

Peptides

Spike protein S1: A
Angiotensin-converting enzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

Spike protein S1

Angiotensin-converting enzyme

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