SMTL ID : 7fqk.1 (3 other biounits)

Crystal Structure of human Legumain in complex with (2S)-N-[(3S)-5-amino-1-(1,3-oxazol-2-yl)-5-oxopent-1-yn-3-yl]-1-[1-[4-(trifluoromethoxy)phenyl]cyclopropanecarbonyl]pyrrolidine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: V.164, N.168, M.195, M.196, N.197, H.198, L.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.198, A:H.198 Water bridges: A:N.197

1 x WS9: N-[(1E,3R)-5-amino-1-(1,3-oxazol-2-yl)-5-oxopent-1-en-3-yl]-1-{1-[4-(trifluoromethoxy)phenyl]cyclopropane-1-carbonyl}-L-prolinamide(Covalent)

WS9.2: 14 residues within 4Å: Chain A: Y.42, R.45, H.46, N.148, H.149, G.150, E.188, C.190, S.216, S.217, Y.218, A.219, Y.229, D.232 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.218, A:Y.229, A:Y.229 Hydrogen bonds: A:R.45, A:S.217, A:S.217, A:A.219 Water bridges: A:R.45

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.168, E.169, H.172, H.198 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.198 Water bridges: A:N.168, A:N.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bartels, B. et al., Crystal Structure of a human Legumain complex. To be published

Release Date

2023-10-11

Peptides

Legumain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Legumain

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