SMTL ID : 7fql.2 (7 other biounits)

Crystal Structure of human Legumain in complex with (2S)-N-[(1S)-3-amino-1-cyano-3-oxopropyl]-1-[1-[4-[(2,4-difluorophenyl)methoxy]phenyl]cyclopropanecarbonyl]pyrrolidine-2-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.168, H.198, L.199, P.200 No protein-ligand interaction detected (PLIP)

1 x WSN: N-[(2R)-4-amino-1-imino-4-oxobutan-2-yl]-1-(1-{4-[(2,4-difluorophenyl)methoxy]phenyl}cyclopropane-1-carbonyl)-L-prolinamide(Covalent)

WSN.2: 16 residues within 4Å: Chain A: Y.42, R.45, H.46, N.148, H.149, G.150, E.188, C.190, S.217, Y.218, A.219, Y.222, S.227, T.228, Y.229, D.232 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.42, A:A.219 Hydrogen bonds: A:R.45, A:H.149, A:G.150, A:S.217, A:S.217, A:A.219 Halogen bonds: A:R.45, A:S.227

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: G.27, H.30, H.141, Q.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.283 Salt bridges: A:H.30, A:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bartels, B. et al., Crystal Structure of a human Legumain complex. To be published

Release Date

2023-10-11

Peptides

Legumain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Legumain

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