SMTL ID : 7gaa.1

PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z1198233191

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x K7L: (4S)-imidazo[1,2-a]pyrimidine-5,7-diol

K7L.1: 8 residues within 4Å: Chain A: I.65, F.80, F.81, L.82, L.83, S.88, M.89 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.82, A:M.89

9 x EDO: 1,2-ETHANEDIOL

EDO.2: 2 residues within 4Å: Chain A: S.88, V.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.88 EDO.3: 5 residues within 4Å: Chain A: K.50, F.53, L.54, I.67, R.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.50, A:K.50, A:L.54 EDO.4: 4 residues within 4Å: Chain A: K.9, F.14, R.17, D.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.9, A:R.17 EDO.5: 3 residues within 4Å: Chain A: K.66, R.69 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: S.62, I.65, K.66 Ligands: K7L.1, EDO.5 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: T.7, R.38, Y.39, K.40, V.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.40 EDO.8: 6 residues within 4Å: Chain A: F.8, R.12, Q.16, R.17, D.20, K.52 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:Q.16, A:D.20, A:K.52 Water bridges: A:D.20 EDO.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.10: 7 residues within 4Å: Chain A: H.87, M.89, V.90, S.91, T.94, V.99, E.103 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.91, A:S.91, A:T.94, A:E.103

1 x CL: CHLORIDE ION

CL.11: 3 residues within 4Å: Chain A: H.28, P.29, T.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-09-04

Peptides

Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated proteins 1A/1B light chain 3B

Related Entries With Identical Sequence