SMTL ID : 7gae.1

PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z1688504114

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x GV4: 2-cyano-~{N}-(1,3,5-trimethylpyrazol-4-yl)ethanamide

GV4.1: 2 residues within 4Å: Chain A: R.22, R.25 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.22 Hydrogen bonds: A:R.25 pi-Cation interactions: A:R.22

9 x EDO: 1,2-ETHANEDIOL

EDO.2: 3 residues within 4Å: Chain A: H.87, S.88, V.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.87, A:S.88, A:S.88 EDO.3: 3 residues within 4Å: Chain A: K.50, F.53, L.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.50 EDO.4: 4 residues within 4Å: Chain A: K.9, F.14, R.17, D.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.9, A:R.17 EDO.5: 3 residues within 4Å: Chain A: K.66, R.69 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.66 EDO.6: 5 residues within 4Å: Chain A: S.62, I.65, K.66, V.92 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.62 EDO.7: 4 residues within 4Å: Chain A: T.7, R.38, Y.39, K.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.40 Water bridges: A:E.37 EDO.8: 6 residues within 4Å: Chain A: F.8, R.12, Q.16, R.17, D.20, K.52 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12, A:Q.16, A:D.20, A:D.20, A:K.52 EDO.9: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.86 EDO.10: 7 residues within 4Å: Chain A: M.61, V.84, H.87, M.89, S.91, T.94, V.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.91, A:T.94, A:E.103

1 x CL: CHLORIDE ION

CL.11: 3 residues within 4Å: Chain A: H.28, P.29, T.30 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., PanDDA analysis group deposition. To Be Published

Release Date

2024-09-04

Peptides

Microtubule-associated proteins 1A/1B light chain 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated proteins 1A/1B light chain 3B

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