SMTL ID : 7h36.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z1688504114 (A71EV2A-x0310)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

1 x GV4: 2-cyano-~{N}-(1,3,5-trimethylpyrazol-4-yl)ethanamide(Non-covalent)

GV4.1: 13 residues within 4Å: Chain A: H.21, S.87, E.88, Y.89, S.105, E.106, P.107, C.110, V.124, S.125, T.126, G.127, G.128 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.124 Hydrogen bonds: A:S.125, A:G.127 Water bridges: A:S.87, A:S.87

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.56, C.58, C.116, H.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.58, A:C.116, A:H.118

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: C.116, Q.117, G.119 No protein-ligand interaction detected (PLIP) DMS.4: 3 residues within 4Å: Chain A: D.35, S.36, S.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:S.37 Salt bridges: A:D.35 DMS.5: 1 residues within 4Å: Chain A: Y.64 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.64 DMS.6: 2 residues within 4Å: Chain A: V.102, G.103 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lithgo, R.M. et al., Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals. Biorxiv (2024)

Release Date

2024-04-24

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 2A

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