SMTL ID : 7h3a.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z53860899 (A71EV2A-x0351)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

3 x STV: ~{N}-(1,3-benzodioxol-5-ylmethyl)ethanesulfonamide(Non-covalent)

STV.1: 3 residues within 4Å: Chain A: P.73, V.74, S.75 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.73 STV.2: 11 residues within 4Å: Chain A: A.86, S.87, E.88, S.105, E.106, P.107, C.110, S.125, T.126, G.127, G.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.88 Water bridges: A:G.127 STV.3: 5 residues within 4Å: Chain A: H.21, L.22, A.23, H.25, W.28 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.25, A:H.25 pi-Stacking: A:H.25

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.56, C.58, C.116, H.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.58, A:C.116, A:H.118

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 3 residues within 4Å: Chain A: D.35, S.36, S.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:S.37 Salt bridges: A:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lithgo, R.M. et al., Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals. Biorxiv (2024)

Release Date

2024-04-24

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 2A

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