SMTL ID : 7h40.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z1217131798 (A71EV2A-x0526)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x YZK: (3M)-3-(2-methyl-1H-imidazol-1-yl)pyridine(Non-covalent)

YZK.1: 8 residues within 4Å: Chain A: I.82, L.98, L.100, T.126, G.127, G.128, N.129, L.131 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.131, A:L.131 Hydrogen bonds: A:T.126, A:N.129

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.56, C.58, C.116, H.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.58, A:C.116, A:H.118

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 2 residues within 4Å: Chain A: Q.117, G.119 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.52 DMS.4: 3 residues within 4Å: Chain A: D.35, S.36, S.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:S.37 Salt bridges: A:D.35 DMS.5: 2 residues within 4Å: Chain A: Y.64, H.71 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.64 DMS.6: 2 residues within 4Å: Chain A: V.102, G.103 No protein-ligand interaction detected (PLIP) DMS.7: 4 residues within 4Å: Chain A: S.87, E.88, Y.89, Y.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.90

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 1 residues within 4Å: Chain A: F.83 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lithgo, R.M. et al., Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease. To Be Published

Release Date

2024-04-24

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 2A

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