SMTL ID : 7h41.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z1217960891 (A71EV2A-x0528)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x 01: (3R)-3-(3-fluorophenoxy)-1-methylpyrrolidin-2-one

01.1: 12 residues within 4Å: Chain A: H.21, S.87, E.88, Y.90, R.93, S.105, E.106, P.107, C.110, S.125, T.126, G.127 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.107 Hydrogen bonds: A:R.93 01.2: 3 residues within 4Å: Chain A: H.25, W.28, A.29 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.28

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.56, C.58, C.116, H.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.58, A:C.116, A:H.118

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: D.35, S.36, S.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:S.37 Salt bridges: A:D.35 DMS.5: 2 residues within 4Å: Chain A: Y.64, H.71 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lithgo, R.M. et al., Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease. To Be Published

Release Date

2024-04-24

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 2A

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