SMTL ID : 7h4t.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z276142580 (A71EV2A-x1105)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

2 x 5SH: 4-phenylpyridine(Non-covalent)

5SH.1: 6 residues within 4Å: Chain A: T.60, G.61, V.62, R.115, C.116, Q.117 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.62, A:R.115, A:Q.117 5SH.2: 4 residues within 4Å: Chain A: V.62, H.71, I.113, R.115 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.62, A:I.113, A:R.115 pi-Stacking: A:H.71

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.56, C.58, C.116, H.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.58, A:C.116, A:H.118

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 2 residues within 4Å: Chain A: Q.117, G.119 No protein-ligand interaction detected (PLIP) DMS.5: 3 residues within 4Å: Chain A: D.35, S.36, S.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.36, A:S.37 Salt bridges: A:D.35 DMS.6: 1 residues within 4Å: Chain A: V.102 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.103

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain A: F.83, Y.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lithgo, R.M. et al., Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease. To Be Published

Release Date

2024-04-24

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 2A

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