SMTL ID : 7h4v.1

Group deposition for crystallographic fragment screening of Coxsackievirus A16 (G-10) 2A protease -- Crystal structure of Coxsackievirus A16 (G-10) 2A protease in complex with Z57663553 (A71EV2A-x1128)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x 01: 5-phenyl-1,3,4-oxadiazol-2-ol

01.1: 2 residues within 4Å: Chain A: H.25, W.28 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.28 Water bridges: A:T.24 pi-Stacking: A:H.25

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.56, C.58, C.116, H.118 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.58, A:C.116, A:H.118

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 2 residues within 4Å: Chain A: D.35, S.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.37 Salt bridges: A:D.35 DMS.4: 2 residues within 4Å: Chain A: Y.64, H.71 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.64 DMS.5: 1 residues within 4Å: Chain A: V.102 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lithgo, R.M. et al., Crystallographic Fragment Screen of Coxsackievirus A16 2A Protease identifies new opportunities for the development of broad-spectrum anti-enterovirals. Biorxiv (2024)

Release Date

2024-04-24

Peptides

Protease 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease 2A

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