SMTL ID : 7h6h.1

THE 1.94 A CRYSTAL STRUCTURE OF HUMAN CATHEPSIN G IN COMPLEX WITH 1-[(7-fluoronaphthalen-1-yl)methyl]-3-[[methoxycarbonyl(methyl)amino]methyl]indole-2-carboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.10, E.63 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.10, H2O.1, H2O.7, H2O.8

1 x 01: 1-[(7-fluoronaphthalen-1-yl)methyl]-3-{[(methoxycarbonyl)(methyl)amino]methyl}-1H-indole-2-carboxylic acid

01.2: 17 residues within 4Å: Chain A: S.27, R.28, C.29, H.44, C.45, W.46, A.176, F.177, K.178, G.179, S.181, V.195, S.196, Y.197, G.198, K.199, E.206 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.44, A:F.177 Hydrogen bonds: A:S.27, A:G.179, A:S.181, A:S.181 pi-Stacking: A:H.44

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.148, R.150, Q.151, R.154 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.148, A:R.154 SO4.4: 2 residues within 4Å: Chain A: R.62, N.64 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.62, A:E.63 Salt bridges: A:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markus, R. et al., Crystal structures of human Chymase and Cathepsin G. To be published

Release Date

2025-03-05

Peptides

Cathepsin G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin G

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