SMTL ID : 7ik7.1

Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the O'Brien group -- Crystal Structure of SARS-CoV-2 NSP3 Macrodomain in complex with POB0218 (Mac1-x10586)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x 01: (2P)-2-[2-(ethylamino)-1,3-benzothiazol-6-yl]cyclopent-1-ene-1-carboxylic acid

01.1: 8 residues within 4Å: Chain A: D.22, G.48, V.49, A.52, P.125, G.130, V.155, F.156 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.49, A:F.156 Hydrogen bonds: A:D.22, A:F.156 Water bridges: A:L.126, A:D.157

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: Y.42, K.44 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the O'Brien group. To Be Published

Release Date

2025-08-13

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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