SMTL ID : 7jkz.1

Bromodomain-containing protein 4 (BRD4) bromodomain 2 (BD2) complexed with YF3-126

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x YF6: N-(1-[1,1-di(pyridin-2-yl)ethyl]-6-{1-methyl-6-oxo-5-[(piperidin-4-yl)amino]-1,6-dihydropyridin-3-yl}-1H-indol-4-yl)ethanesulfonamide(Non-covalent)

YF6.1: 14 residues within 4Å: Chain A: W.44, P.45, F.46, K.48, P.49, V.50, D.51, L.55, L.57, Y.102, N.103, H.107, V.109, M.112 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.55, A:L.55, A:L.57, A:Y.102 Hydrogen bonds: A:D.51, A:N.103, A:N.103 Water bridges: A:N.103, A:H.107 pi-Stacking: A:W.44

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: A.36, K.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.32, K.74, E.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.32, A:K.74, A:E.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Novel Pyrrolopyridone Bromodomain and Extra-Terminal Motif (BET) Inhibitors Effective in Endocrine-Resistant ER+ Breast Cancer with Acquired Resistance to Fulvestrant and Palbociclib. J.Med.Chem. (2020)

Release Date

2021-08-25

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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