SMTL ID : 7jm2.1

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with apramycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-trimer

Ligands

3 x AM2: APRAMYCIN(Non-covalent)

AM2.1: 10 residues within 4Å: Chain A: N.113, H.135, D.144, D.145, Q.147, Q.159, Y.170, Y.172 Chain C: E.85, Y.102 9 PLIP interactions: 3 interactions with chain C, 6 interactions with chain A Hydrogen bonds: C:Y.102, A:N.113, A:D.145, A:Q.147, A:Q.147, A:Q.159 Water bridges: C:D.81, C:E.85, A:N.113 AM2.2: 11 residues within 4Å: Chain A: E.85, Y.102 Chain B: N.113, H.135, D.144, D.145, Q.147, Q.159, Y.170, Y.172 Ligands: CL.3 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.113, B:D.144, B:D.145, B:Q.147, B:Q.147, B:Q.159, B:Y.172, A:Y.102 Water bridges: B:N.113, B:N.113, A:D.81, A:E.85, A:E.85 AM2.4: 11 residues within 4Å: Chain B: E.85, Y.102 Chain C: N.113, H.135, D.144, D.145, Q.147, Q.159, Y.170, Y.172 Ligands: CL.5 15 PLIP interactions: 10 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:N.113, C:D.145, C:Q.147, C:Q.147, C:Q.159, C:Y.172, B:Y.102, B:Y.102 Water bridges: C:N.113, C:N.113, C:Q.147, C:Y.172, B:D.81, B:E.85, B:E.85

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Ligands: AM2.2 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Ligands: AM2.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., Crystal structure of aminoglycoside resistance enzyme ApmA, complex with apramycin. To Be Published

Release Date

2020-09-16

Peptides

Aminocyclitol acetyltransferase ApmA: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Aminocyclitol acetyltransferase ApmA

Related Entries With Identical Sequence