SMTL ID : 7jw9.1

Ternary cocrystal structure of alkanesulfonate monooxygenase MsuD from Pseudomonas fluorescens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-tetramer

Ligands

4 x 03S: methanesulfonic acid(Non-covalent)

03S.1: 8 residues within 4Å: Chain A: F.29, W.218, R.248, R.319, G.320, G.321, S.322 Ligands: FMN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.322 Salt bridges: A:R.248, A:R.319 03S.4: 8 residues within 4Å: Chain B: F.29, L.69, W.218, R.248, R.319, G.321, S.322 Ligands: FMN.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.322 Salt bridges: B:R.248, B:R.319 03S.6: 9 residues within 4Å: Chain C: F.29, L.69, W.218, R.248, R.319, G.320, G.321, S.322 Ligands: FMN.7 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.322 Salt bridges: C:R.248, C:R.319 03S.8: 8 residues within 4Å: Chain D: F.29, W.218, R.248, R.319, G.320, G.321, S.322 Ligands: FMN.9 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.322 Salt bridges: D:R.248, D:R.319

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 22 residues within 4Å: Chain A: P.71, T.72, R.100, N.127, V.129, T.130, G.131, G.132, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, W.218, R.248, S.288, E.289, G.290 Ligands: 03S.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.216, A:W.218, A:W.218, A:R.248 Hydrogen bonds: A:T.72, A:T.72, A:R.100, A:N.127, A:T.130, A:G.131, A:G.132, A:Y.150, A:Y.150, A:S.200, A:S.201, A:S.288, A:E.289, A:G.290 Water bridges: A:D.133 Salt bridges: A:H.146 FMN.5: 21 residues within 4Å: Chain B: P.71, T.72, N.127, V.129, T.130, G.131, G.132, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, W.218, R.248, S.288, E.289, G.290 Ligands: 03S.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:L.216, B:W.218, B:R.248 Hydrogen bonds: B:T.72, B:T.72, B:N.127, B:T.130, B:G.131, B:G.132, B:Y.150, B:S.200, B:S.201, B:S.288, B:S.288, B:E.289, B:G.290 Water bridges: B:G.198 Salt bridges: B:H.146 FMN.7: 23 residues within 4Å: Chain C: P.71, T.72, R.100, N.127, V.128, V.129, T.130, G.131, G.132, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, W.218, R.248, S.288, E.289, G.290 Ligands: 03S.6 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:L.216, C:W.218, C:R.248 Hydrogen bonds: C:T.72, C:T.72, C:R.100, C:N.127, C:T.130, C:T.130, C:G.131, C:G.132, C:Y.150, C:Y.150, C:S.200, C:S.201, C:S.288, C:S.288, C:E.289, C:G.290 Salt bridges: C:H.146 FMN.9: 22 residues within 4Å: Chain D: P.71, T.72, N.127, V.128, V.129, T.130, G.131, G.132, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, W.218, R.248, S.288, E.289, G.290 Ligands: 03S.8 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:L.216, D:W.218, D:R.248 Hydrogen bonds: D:T.72, D:T.72, D:N.127, D:T.130, D:T.130, D:G.131, D:G.132, D:Y.150, D:S.200, D:S.201, D:S.288, D:S.288, D:E.289, D:G.290 Water bridges: D:V.128, D:G.198 Salt bridges: D:H.146

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: A.296, D.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liew, J.J.M. et al., Structures of the alkanesulfonate monooxygenase MsuD provide insight into C-S bond cleavage, substrate scope, and an unexpected role for the tetramer. J.Biol.Chem. (2021)

Release Date

2021-05-26

Peptides

Alkanesulfonate monooxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Alkanesulfonate monooxygenase

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