SMTL ID : 7k64.2 (1 other biounit)

Binary titrated soak structure of alkanesulfonate monooxygenase MsuD from Pseudomonas fluorescens with FMN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

3 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 23 residues within 4Å: Chain A: P.71, T.72, N.127, V.129, T.130, G.131, G.132, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, T.217, W.218, R.248, D.287, S.288, E.289, G.290 Ligands: SIN.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.216, A:W.218, A:R.248 Hydrogen bonds: A:T.72, A:T.72, A:N.127, A:T.130, A:T.130, A:G.131, A:G.132, A:Y.150, A:S.200, A:S.201, A:S.288, A:E.289, A:G.290 Water bridges: A:V.128, A:G.198 Salt bridges: A:H.146 FMN.7: 16 residues within 4Å: Chain C: P.71, T.72, N.127, V.129, T.130, G.131, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, W.218, R.248 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:L.216, C:W.218, C:R.248 Hydrogen bonds: C:T.72, C:T.72, C:N.127, C:T.130, C:G.131, C:Y.150, C:Y.150, C:G.198, C:S.200, C:S.201 Salt bridges: C:H.146 FMN.9: 16 residues within 4Å: Chain D: P.71, T.72, N.127, V.129, T.130, G.131, G.132, H.146, Y.150, G.198, G.199, S.200, S.201, A.204, L.216, W.218 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:L.216, D:W.218 Hydrogen bonds: D:T.72, D:T.72, D:N.127, D:T.130, D:T.130, D:T.130, D:G.131, D:G.198, D:S.200, D:S.201 Salt bridges: D:H.146

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.2: 10 residues within 4Å: Chain A: F.29, H.33, L.69, P.71, W.218, R.248, R.319, G.321, S.322 Ligands: FMN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.71 Hydrogen bonds: A:S.322 Water bridges: A:G.321 Salt bridges: A:H.33, A:R.248, A:R.319, A:R.319

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: D.78, W.80 Chain B: M.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.78

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: G.102, I.104, L.176 Chain B: G.102 No protein-ligand interaction detected (PLIP) GOL.6: 9 residues within 4Å: Chain A: V.108 Chain B: D.78, W.80, A.98, I.99, R.100, I.103, I.104, S.109 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.78, B:R.100, B:R.100, B:S.109

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 6 residues within 4Å: Chain B: H.146, Y.150, G.199, S.200, S.201, A.204 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.150, B:S.200, B:S.200, B:S.201 Salt bridges: B:H.146

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 1 residues within 4Å: Chain C: R.248 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liew, J.J.M. et al., Structures of the alkanesulfonate monooxygenase MsuD provide insight into C-S bond cleavage, substrate scope, and an unexpected role for the tetramer. J.Biol.Chem. (2021)

Release Date

2021-05-26

Peptides

Alkanesulfonate monooxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Alkanesulfonate monooxygenase

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