SMTL ID : 7k5m.1 (2 other biounits)

CRYSTAL STRUCTURE OF HBV CAPSID Y132A MUTANT IN COMPLEX WITH N-(3-chloro-4-fluorophenyl)-3-phenyl-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide AT 2.65A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x VXJ: N-(3-chloro-4-fluorophenyl)-3-phenyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide(Non-covalent)

VXJ.1: 12 residues within 4Å: Chain A: F.24, P.26, D.30, L.31, T.34, W.103, I.106, S.107, F.111, Y.119, I.140, L.141 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.26, A:F.111, A:Y.119 Hydrogen bonds: A:L.141 Halogen bonds: A:D.30 VXJ.3: 11 residues within 4Å: Chain B: P.26, D.30, L.31, T.34, W.103, I.106, S.107, F.111, Y.119, I.140, L.141 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.26, B:F.111, B:Y.119, B:L.141 Hydrogen bonds: B:L.141, B:L.141 Halogen bonds: B:D.30

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 2 residues within 4Å: Chain A: R.113 Chain B: H.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.113 IPA.4: 3 residues within 4Å: Chain A: H.48 Chain B: P.51, R.113 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuduk, S.D. et al., Identification of a new class of HBV capsid assembly modulator. Bioorg.Med.Chem.Lett. (2021)

Release Date

2021-07-28

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein

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