SMTL ID : 7k5m.3 (2 other biounits)

CRYSTAL STRUCTURE OF HBV CAPSID Y132A MUTANT IN COMPLEX WITH N-(3-chloro-4-fluorophenyl)-3-phenyl-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide AT 2.65A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

2 x VXJ: N-(3-chloro-4-fluorophenyl)-3-phenyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide(Non-covalent)

VXJ.1: 11 residues within 4Å: Chain A: F.24, P.26, D.30, L.31, T.34, W.103, I.106, S.107, Y.119, I.140, L.141 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.26, A:Y.119 Hydrogen bonds: A:L.141 Halogen bonds: A:D.30 VXJ.4: 9 residues within 4Å: Chain B: P.26, L.31, T.34, W.103, I.106, S.107, Y.119, I.140, L.141 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.26, B:Y.119 Hydrogen bonds: B:L.141

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 3 residues within 4Å: Chain A: P.51, R.113 Chain B: H.48 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.51 Hydrogen bonds: A:R.113, A:R.113 IPA.3: 1 residues within 4Å: Chain A: H.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuduk, S.D. et al., Identification of a new class of HBV capsid assembly modulator. Bioorg.Med.Chem.Lett. (2021)

Release Date

2021-07-28

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Capsid protein

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