SMTL ID : 7k9z.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with the Fab fragments of neutralizing antibodies 298 and 52

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain E: G.21, F.24, N.25 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rujas, E. et al., Multivalency transforms SARS-CoV-2 antibodies into ultrapotent neutralizers. Nat Commun (2021)

Release Date

2020-10-28

Peptides

52 Fab Heavy Chain: A
52 Fab Light Chain: B
298 Fab Light Chain: C
298 Fab Heavy Chain: D
Spike protein S1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

D
B

E
E

52 Fab Heavy Chain

52 Fab Light Chain

298 Fab Light Chain

298 Fab Heavy Chain

Spike protein S1

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