SMTL ID : 7kbp.1 (1 other biounit)

Herceptin Diabody with R83T, E85C Mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.16, G.17, S.18, N.85, S.86 Chain B: K.66, G.67 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.17, A:S.86, B:K.66 Water bridges: A:N.85 GOL.2: 4 residues within 4Å: Chain A: S.18, L.19, R.20, Q.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.83, A:Q.83 Water bridges: A:R.20 GOL.3: 4 residues within 4Å: Chain A: H.217, Y.218, T.220 Chain B: Y.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.217 GOL.4: 3 residues within 4Å: Chain A: Y.58, T.59, R.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.59, A:T.59, A:R.60 GOL.5: 4 residues within 4Å: Chain A: Y.175, Y.181, S.182 Chain B: F.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.182 GOL.6: 3 residues within 4Å: Chain A: G.27, F.28, R.99 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.27, A:R.99, A:R.99 Water bridges: A:N.29, A:N.29 GOL.7: 8 residues within 4Å: Chain B: Q.163, K.171, L.173, P.185, R.187, F.188, E.207, D.208 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.163, B:Q.163, B:D.208 GOL.8: 8 residues within 4Å: Chain B: T.33, Y.34, W.100, G.101, G.102, D.103, F.105, Y.106 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.33, B:Y.34, B:G.102, B:D.103, B:F.105 GOL.9: 5 residues within 4Å: Chain B: L.180, Y.181, S.182, G.183, V.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.181, B:G.183, B:V.184 GOL.10: 7 residues within 4Å: Chain A: Q.40 Chain B: Q.164, K.165, P.166, G.167, K.168, T.211 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.164, B:G.167, B:K.168, B:K.168, B:T.211 Water bridges: B:Q.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chesterman, C. et al., Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure (2021)

Release Date

2021-03-10

Peptides

Single-chain Fv: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Single-chain Fv

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