SMTL ID : 7kbp.2 (1 other biounit)

Herceptin Diabody with R83T, E85C Mutations

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: G.16, G.17, S.18, N.85, S.86 Chain B: G.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.16, A:S.86 GOL.2: 4 residues within 4Å: Chain A: S.18, L.19, R.20, Q.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.83, A:Q.83 Water bridges: A:R.20 GOL.3: 5 residues within 4Å: Chain A: Q.163, P.185, F.188, E.207, D.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.163, A:D.208 GOL.4: 3 residues within 4Å: Chain A: Y.58, T.59, R.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.59, A:T.59 GOL.5: 7 residues within 4Å: Chain A: Q.40, Y.96 Chain B: Q.164, K.165, P.166, G.167, K.168 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.165, B:G.167, B:K.168 Water bridges: B:T.211 GOL.6: 6 residues within 4Å: Chain A: Y.213 Chain B: Q.40, A.41, P.42, G.43, K.44 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.43, A:Y.213 Water bridges: B:G.43, A:Y.213, A:Y.213 GOL.7: 6 residues within 4Å: Chain B: Q.163, L.173, P.185, F.188, E.207, D.208 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.163, B:D.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chesterman, C. et al., Co-crystallization with diabodies: A case study for the introduction of synthetic symmetry. Structure (2021)

Release Date

2021-03-10

Peptides

Single-chain Fv: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Single-chain Fv

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