SMTL ID : 7kcz.2 (1 other biounit)

CRYSTAL STRUCTURE OF RHESUS MACAQUE (MACACA MULATTA) IGG1 FC FRAGMENT- FC-GAMMA RECEPTOR III COMPLEX V158 MUTANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-2-1-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 13 residues within 4Å: Chain A: F.18, F.20, T.37, V.39, V.41, D.42, Q.72, N.74, T.76, R.78, K.111 Chain C: T.123, Y.133 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 11 residues within 4Å: Chain B: F.18, F.20, T.37, V.39, V.41, D.42, Q.72, N.74, T.76, R.78 Ligands: NAG.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.37

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.3: 8 residues within 4Å: Chain C: H.45, N.46, V.64, N.65, S.67, G.68, E.69 Ligands: NAG.4 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain C: R.63, N.65 Ligands: NAG-NAG-BMA-FUC.3 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.65 NAG.5: 3 residues within 4Å: Chain C: R.156, N.163 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.156, C:N.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., Decoding human-macaque interspecies differences in Fc-effector functions: The structural basis for CD16-dependent effector function in Rhesus macaques. Front Immunol (2022)

Release Date

2021-10-13

Peptides

IgG1 Fc: AB
Low affinity immunoglobulin gamma Fc region receptor III: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

IgG1 Fc

Low affinity immunoglobulin gamma Fc region receptor III

Related Entries With Identical Sequence