SMTL ID : 7kd5.1

Structure of the C-terminal domain of the Menangle virus phosphoprotein (residues 329 -388), fused to MBP. Space group P212121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:Y.156, A:R.345 Water bridges: A:E.45, A:D.66

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: D.96, A.97, Y.177, I.330, M.331, P.332, N.333 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.331, A:N.333 Water bridges: A:R.99, A:Y.177, A:N.333 EDO.3: 3 residues within 4Å: Chain A: E.39, H.40, P.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.40, A:H.40 EDO.4: 5 residues within 4Å: Chain A: S.374, A.375, A.376, N.414, E.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.374, A:E.415 Water bridges: A:S.377, A:Q.416 EDO.5: 4 residues within 4Å: Chain A: Y.18, N.19, D.297, K.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.18, A:N.19

3 x PIN: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)(Non-covalent)

PIN.6: 4 residues within 4Å: Chain A: S.271, P.272, N.273, K.274 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.274 Water bridges: A:K.274, A:E.275, A:E.275 Salt bridges: A:K.274 PIN.7: 5 residues within 4Å: Chain A: D.165, Y.168, N.186, A.187, G.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.188 Water bridges: A:K.171, A:N.186, A:A.187 PIN.8: 3 residues within 4Å: Chain A: A.380, Y.384, E.415 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:E.415, A:E.415

1 x PRO: PROLINE(Non-covalent)

PRO.9: 5 residues within 4Å: Chain A: K.120, Y.243, G.244, V.245, R.317 3 PLIP interactions: 3 interactions with chain A, Hydrogen bonds: A:Y.243, A:V.245 Salt bridges: A:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Webby, M.N. et al., Structural Analysis of the Menangle Virus P Protein Reveals a Soft Boundary between Ordered and Disordered Regions. Viruses (2021)

Release Date

2021-10-06

Peptides

Maltodextrin-binding protein and Phosphoprotein fusion protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltodextrin-binding protein and Phosphoprotein fusion protein

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