SMTL ID : 7khf.1

CryoEM structure of LILRB1 D3D4 domain-inserted antibody MDB1 Fab in complex with Plasmodium RIFIN (PF3D7_1373400) V2 domain

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: Q.150, Q.184, N.186 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: N.246, T.248, E.286 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain C: Q.184, N.186 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain C: N.246, E.286 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.207, S.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.210 NAG.6: 2 residues within 4Å: Chain C: N.207, S.209 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structural basis of malaria RIFIN binding by LILRB1-containing antibodies. Nature (2021)

Release Date

2021-03-31

Peptides

MDB1 Fab heavy chain: AC
MDB1 Fab light chain: BD
Rifin: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
A

B
L

D
B

E
D

F
C

MDB1 Fab heavy chain

MDB1 Fab light chain

Rifin

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