SMTL ID : 7kia.2 (1 other biounit)

Crystal structure of FGFR2 kinase domain gatekeeper mutant V564F in complex with covalent compound 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x WFD: 1-[4-(4-{4-(4-methylpiperazin-1-yl)-6-[(3-methyl-1H-pyrazol-5-yl)amino]pyrimidin-2-yl}phenyl)piperidin-1-yl]prop-2-en-1-one(Covalent)

WFD.1: 17 residues within 4Å: Chain A: L.27, G.28, E.29, G.30, C.31, F.32, V.35, A.55, K.57, F.104, E.105, Y.106, A.107, S.108, G.110, L.173, D.184 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.35, A:V.35, A:F.104, A:L.173 Hydrogen bonds: A:K.57, A:A.107, A:A.107, A:A.107

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 9 residues within 4Å: Chain A: K.66, R.165, R.189, T.200, T.201, N.202, G.203, R.204, L.205 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.204 Hydrogen bonds: A:R.165, A:R.165, A:R.189, A:T.200, A:N.202, A:G.203, A:R.204, A:R.204 Salt bridges: A:K.66, A:R.165, A:R.165, A:R.189, A:R.189, A:R.204

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: D.61, D.62, A.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brawn, R.A. et al., Discovery of Aminopyrazole Derivatives as Potent Inhibitors of Wild-Type and Gatekeeper Mutant FGFR2 and 3. Acs Med.Chem.Lett. (2021)

Release Date

2021-02-10

Peptides

Fibroblast growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fibroblast growth factor receptor 2

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