SMTL ID : 7kie.1 (1 other biounit)

Crystal structure of FGFR2 kinase domain gatekeeper mutant V564F in complex with covalent compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

monomer

Ligands

1 x WF7: N-{4-[(E)-2-{4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}ethenyl]phenyl}prop-2-enamide(Covalent)

WF7.1: 13 residues within 4Å: Chain A: L.27, G.28, E.29, G.30, C.31, A.55, E.105, Y.106, A.107, S.108, K.109, G.110, L.173 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.27 Hydrogen bonds: A:C.31, A:E.105, A:A.107, A:A.107

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 10 residues within 4Å: Chain A: K.66, R.165, L.187, R.189, T.200, T.201, N.202, G.203, R.204, L.205 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.187 Hydrogen bonds: A:N.202, A:G.203, A:R.204, A:R.204 Salt bridges: A:K.66, A:R.165, A:R.165, A:R.189, A:R.204

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.117, R.120, S.242 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.117, A:R.117, A:R.120, A:R.120, A:S.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brawn, R.A. et al., Discovery of Aminopyrazole Derivatives as Potent Inhibitors of Wild-Type and Gatekeeper Mutant FGFR2 and 3. Acs Med.Chem.Lett. (2021)

Release Date

2021-02-10

Peptides

Fibroblast growth factor receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 2

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