SMTL ID : 7klu.1

Tetrameric human mitochondrial Hsp90 (TRAP1) in the presence of AMP-PNP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 22 residues within 4Å: Chain A: E.62, N.66, A.70, K.73, D.105, M.110, N.118, R.124, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.2, K.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.62, A:N.66, A:K.73, A:D.105, A:G.126, A:S.127, A:S.127, A:Q.147, A:F.148, A:G.149, A:V.150, A:G.151, A:F.152, A:R.349 ANP.4: 20 residues within 4Å: Chain B: E.62, N.66, A.70, M.110, N.118, L.119, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.5, K.6 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:N.66, B:K.73, B:N.118, B:G.126, B:S.127, B:S.127, B:S.127, B:G.146, B:Q.147, B:F.148, B:G.149, B:G.151, B:F.152, B:T.198, B:T.198, B:R.349, B:R.349 ANP.7: 19 residues within 4Å: Chain C: E.62, N.66, A.70, M.110, N.118, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.8, K.9 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:E.62, C:N.66, C:S.125, C:G.126, C:S.127, C:S.127, C:S.127, C:G.146, C:Q.147, C:F.148, C:G.149, C:V.150, C:G.151, C:F.152, C:T.198, C:R.349, C:R.349 ANP.10: 23 residues within 4Å: Chain D: E.62, N.66, A.70, K.73, D.105, M.110, N.118, L.119, R.124, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.11, K.12 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:E.62, D:N.66, D:K.73, D:D.105, D:N.118, D:G.126, D:S.127, D:S.127, D:Q.147, D:F.148, D:G.149, D:V.150, D:G.151, D:F.152, D:T.198

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.66, G.146 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: E.62, N.66 Ligands: ANP.4 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain C: N.66 Ligands: ANP.7 No protein-ligand interaction detected (PLIP) MG.11: 3 residues within 4Å: Chain D: E.62, N.66 Ligands: ANP.10 No protein-ligand interaction detected (PLIP)

4 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:N.118, A:T.121, A:G.149, A:Y.153 K.6: 6 residues within 4Å: Chain B: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:N.118, B:G.149, B:Y.153 K.9: 6 residues within 4Å: Chain C: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.7 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:N.118, C:T.121, C:G.149, C:Y.153 K.12: 6 residues within 4Å: Chain D: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.10 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:N.118, D:T.121, D:R.124, D:G.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.X. et al., Cryo-EM analysis of human mitochondrial Hsp90 in multiple tetrameric states. To Be Published

Release Date

2021-11-03

Peptides

Heat shock protein 75 kDa, mitochondrial, SpyCatcher: AC
Heat shock protein 75 kDa, mitochondrial, SpyTag, Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (chimera): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
C

Heat shock protein 75 kDa, mitochondrial, SpyCatcher

Heat shock protein 75 kDa, mitochondrial, SpyTag, Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (chimera)

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