SMTL ID : 7klv.1

Full-length human mitochondrial Hsp90 (TRAP1) SpyCatcher/SpyTag-SdhB heterodimer in the presence of AMP-PNP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)

ANP.1: 22 residues within 4Å: Chain A: E.62, N.66, A.70, K.73, D.105, M.110, N.118, R.124, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.2, K.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:E.62, A:N.66, A:K.73, A:K.73, A:D.105, A:G.126, A:S.127, A:S.127, A:S.127, A:Q.147, A:F.148, A:G.149, A:V.150, A:G.151, A:F.152, A:T.198, A:R.349 ANP.4: 21 residues within 4Å: Chain B: E.62, N.66, A.70, D.105, M.110, N.118, L.119, S.125, G.126, S.127, G.146, Q.147, F.148, G.149, V.150, G.151, F.152, T.198, R.349 Ligands: MG.5, K.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:E.62, B:N.66, B:D.105, B:D.105, B:N.118, B:S.125, B:G.126, B:S.127, B:S.127, B:G.146, B:Q.147, B:F.148, B:G.149, B:V.150, B:G.151, B:F.152

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.62, N.66 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain B: E.62, N.66 Ligands: ANP.4 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:N.118, A:T.121, A:R.124, A:G.149 K.6: 6 residues within 4Å: Chain B: N.118, T.121, R.124, G.149, Y.153 Ligands: ANP.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:N.118, B:T.121, B:R.124, B:G.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y.X. et al., Cryo-EM analysis of human mitochondrial Hsp90 in multiple tetrameric states. To Be Published

Release Date

2021-11-03

Peptides

Heat shock protein 75 kDa, mitochondrial, SpyCatcher: A
Heat shock protein 75 kDa, mitochondrial, SpyTag, Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (chimera): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Heat shock protein 75 kDa, mitochondrial, SpyCatcher

Heat shock protein 75 kDa, mitochondrial, SpyTag, Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (chimera)

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