SMTL ID : 7kmt.1

Structure of the yeast TRAPPIII-Ypt1(Rab1) complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-2-1-1-1-1-mer

Ligands

2 x PLM: PALMITIC ACID(Covalent)

PLM.1: 13 residues within 4Å: Chain D: L.67, I.68, F.71, C.80, L.90, A.94, F.95, L.99, L.144, V.147, S.151, L.152, V.155 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:L.67, D:L.67, D:I.68, D:F.71, D:F.95, D:L.99, D:L.144, D:V.147, D:L.152, D:V.155 Hydrogen bonds: D:C.80 PLM.2: 11 residues within 4Å: Chain E: F.71, P.78, R.79, C.80, V.89, A.94, L.144, V.147, S.151, V.155 Chain F: V.44 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:F.71, E:F.71, E:V.89, E:A.94, E:L.144, E:V.147, E:V.155, E:V.155, F:V.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joiner, A.M. et al., Structural basis of TRAPPIII-mediated Rab1 activation. Embo J. (2021)

Release Date

2021-06-02

Peptides

Trafficking protein particle complex subunit 23: A
Trafficking protein particle complex subunit 31: B
Trafficking protein particle complex subunit BET5: C
Trafficking protein particle complex subunit BET3: DE
Trafficking protein particle complex subunit 33: F
Trafficking protein particle complex subunit 20: G
GTP-binding protein YPT1: H
Trafficking protein particle complex III-specific subunit 85: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
J

C
G

D
I

E
F

F
E

G
K

H
A

I
B

Trafficking protein particle complex subunit 23

Trafficking protein particle complex subunit 31

Trafficking protein particle complex subunit BET5

Trafficking protein particle complex subunit BET3

Trafficking protein particle complex subunit 33

Trafficking protein particle complex subunit 20

GTP-binding protein YPT1

Trafficking protein particle complex III-specific subunit 85

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