SMTL ID : 7knf.2 (1 other biounit)

1.80A resolution structure of independent Phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (Ce-1 NHOH)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.19, S.68, K.341, D.449, H.450 Chain B: X.15 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.19, A:S.68, A:D.449, A:D.449, A:H.450 ZN.2: 5 residues within 4Å: Chain A: D.408, H.412, H.467 Chain B: T.14, X.15 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Metal complexes: B:T.14, B:?.15, A:D.408, A:H.412, A:H.467

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: I.32, L.33, A.35, T.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.33, A:T.37 NA.4: 5 residues within 4Å: Chain A: N.452, K.455, M.456, H.464, A.466 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.464, A:H.464, A:A.466

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 6 residues within 4Å: Chain A: M.277, G.278, H.291, P.292, N.294, L.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.292, A:N.294, A:L.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiedmann, M. et al., Structure-activity relationship of ipglycermide binding to phosphoglycerate mutases. J.Biol.Chem. (2021)

Release Date

2021-04-07

Peptides

2,3-bisphosphoglycerate-independent phosphoglycerate mutase: A
DTY-ASP-TYR-PRO-GLY-ASP-HIS-CYS-TYR-LEU-TYR-GLY-THR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

DTY-ASP-TYR-PRO-GLY-ASP-HIS-CYS-TYR-LEU-TYR-GLY-THR

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